SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4289

Length: 2894 nt

UniGene Fasta

>biog2_v2.0_unigene4289
ATGGGGGCTCTCTGACAGTTCATTCACGGTTTTGAGGCGAGTGCGATGTTGCTGAGGTCGTATGATGCAATTGCAATGTTGAGGGTTTTCTGAGTGGATCGATAGTCGGGACTATTTTCTCTCCTACGATACATATCCTTTTGCTTTGCAACGACATCGCTTCGTTTGCGGCCATTTTCGCGGCTAAAACAAGAGAATATATTGACTTATTGGCGTACCTGGACGAAGAACAGGTCCAGAGAAGTTTTTCTTCTCGGTTTCGAGCTTTTTGCATTGTGATAATACACCAAGAAGCGTCTGTTTGCTTTCGTCCACGAGGTATTGAGGTTGCTTCTTCTTGAAATTTGATGCGCGAGGGCTTCCGAAAGGTTCCAGTCATGGGACGGAAGCAGAAATGCACGGTGTTCAACAATACTCGAAAAGATTATAACGGCTTTATGTTCCTTGCGGCGTTTATTACAGCGGGTTTTCTTGTCAGCTCAGTTATTGCTGCAGAAGAAGCGGTAAAGTTAGGAACTGTGATTGGTATTGATCTTGGAACTACATACTCCTGTGTGGGTGTTTATAAAAATGGTCATGTTGAAATCATAGCAAATGACCAAGGAAATAGGATTACACCTTCTTGGGTTGCCTTTACTGATACCGAAAGACTCATTGGAGAGGCCGCCAAAAATCAGGCGGCTATGAACCCTGACAGGACTGTTTTTGATGTGAAACGATTGATTGGTAGGAAGTATGAAGACAAGGAGGTCCAAAGAGACGTCAAACTTCTGCCCTACAAAATTGTAAATAAAGATGGGAAACCTTATATCCAGGTGAAGATTAGGGATGGTGAAATCAAAGTTTTCAGTCCTGAGGAAATCAGTGCAATGATTTTGTTGAAAATGAAGGAGACAGCGGAGGCCTACCTTGGGAAGAAAATCAAGGATGCAGTAGTTACTGTTCCAGCATATTTCAATGATGCCCAAAGACAGGCAACCAAGGATGCCGGTGTAATTGCTGGGCTAAATGTTGCTCGTATAATAAATGAACCAACAGCTGCAGCAATTGCATATGGATTGGATAAAAGGGAGGAGAAAAAATATTCTTGTTTATGACCTTGGAGGTGGAACTTTTGATGTTAGTATTCTCACCATTGATAATGGTGTCTTTGAAGTGCTGTCAACCAGCGGGGACACTCATTTAGGAGGAGAGGACTTCGATCAACGAATTATGGATTACTTCATAAAATTGGTCAAGAAAAAACACAACAAAGATATTAGCAAGGACAACAGAGCTCTCGGCAAACTTAGGAGAGAGTGTGAGAGGGCGAAAAGAGCTCTGAGCAGCCAGCACCAAGTTCGTGTTGAAATTGAATCACTTTTTGATGGCATTGATTTTTCAGAACCATTAACAAGAGCAAGATTCGAGGAACTCAATATGGACCTCTTCAAGAAAACAATGGGGCCAGTAAAGAAGGCTCTAGATGATGCCAACTTGCAGAAGACTGAGATCAATGAAATTGTGCTTGTTGGAGGAAGTACTCGCATACCAAAGGTCCAGCAATTATTGAAGGACTTCTTTGATGGCAAGGAGCCCAACAAAGGTGTTAATCCAGATGAAGCCGTGGCTTACGGGGCTGCGGTTCAGGGTGGTATTCTGAGTGGTGAGGGAGGTGACGAAACAAAAGATATTCTTCTATTGGATGTTGCTCCTCTCAGTCTAGGTATCGAAACTGTTGGAGGAGTAATGACCAAACTAATTCCAAGGAACACTGTCATACCAACAAAGAAGTCACAAGTGTTCACAACTTATCAAGATCAACAAACCACTGTTTCAATCAAGGTTTATGAAGGGGAGCGGAGTCTAACAAAGGACTGCCGAGAATTAGGCAAATTTGATCTGTCTGGAATCCCTCCAGCTCCTCGTGGTGTGCCACAGATTGAGGTTACCTTTGAGGTTGATGCCAACGGTATCCTTAATGTAAGAGCAGAGGACAAGGGCACCAAGAAATCAGAGAAGATCACCATAACAAATGACAAAGGCCGGTTGAGCCAGGAAGAAATAGACAGGATGGTCAAGGAGGCAGAGGAGTTTGCAGAGGAGGATAAGAAAGTCAAGGAAAGAATTGATGCAAGGAACAATCTTGAAACATACGTCTACAACATGAAAAGCACCATCAATGAGAAGGACAAATTGGCAGATAAAATTGATTCTGATGACAAGGAAAAGATTGAAGAGACACTCAAAGAAGCACTGGATTGGCTTGATGAAAACCAGTCGGCTGAGAAGGACGACTTCGAGGAGAAGTTGAAAGAGGTCGAAGCTGTATGTAACCCCGTCATTAAGAAAGTATACGAGAAAACTGGAGGACCTTCTGGAGGTGATGAAGAAGAAGAAGATGACTCACACGAGGAGCTCTAAACAAGTTCAGTTTTCCACTCAATTTTAGTCCGCACAGTTCACGATGAACAAATTTTACAAGGGAGGTCTTTGAGCTCAATAGGGTTATGAGAACAGCATTTTTGACGATGATTGGCAAGAACAAAATATTCAAATGAAAGTCAAATGACGATCTGTTTGTTTTTTCTATCAATCAGAATGTTATTTCAGAGAATTTTCAATTTATTCTTGGCATGTAGAGGCCCTTGTTAATGTGCCTTTCTTTTTTAAAGAAAGTTGTCACTTATTCGTGAATGAAGTTTGCGTTTTTGTGTTCCTTTTCCATTGATCCCTATCCTTATTTTATCTCTAGCCCTAGGAAGTATTTGCCACAAGAACTATTAGAGTTAGAGAATGCTTAGATCCTTTCATATTATAGCTCATTATTTTGCACACAAGAGATGTACAATTGAGCAATTTTAGTGATAGTGTTACCTGTACCTTGCCCGAATGATAACGTAGCATAGAACATT

Ace file of the UniGene biog2_v2.0_unigene4289

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23008	168/168

Source	Descriptions	Term	Type	Identity
AutoFact	Luminal binding protein n=3 Tax=Pinaceae RepID=Q40924_PSEMZ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	luminal binding protein	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	95%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS17

Fln msg: Overlapping hits, possible frame ERROR between 1082 and 1066,

Fln protein: MREGFRKVPVMGRKQKCTVFNNTRKDYNGFMFLAAFITAGFLVSSVIAAEEAVKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAMNPDRTVFDVKRLIGRKYEDKEVQRDVKLLPYKIVNKDGKPYIQVKIRDGEIKVFSPEEISAMILLKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDxxxxxxxILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDQRIMDYFIKLVKKKHNKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNMDLFKKTMGPVKKALDDANLQKTEINEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGKFDLSGIPPAPRGVPQIEVTFEVDANGILNVRAEDKGTKKSEKITITNDKGRLSQEEIDRMVKEAEEFAEEDKKVKERIDARNNLETYVYNMKSTINEKDKLADKIDSDDKEKIEETLKEALDWLDENQSAEKDDFEEKLKEVEAVCNPVIKKVYEKTGGPSGGDEEEEDDSHEEL*

Protein Length: 687

Fln nts: ATGGGGGCTCTCTGACAGTTCATTCACGGTTTTGAGGCGAGTGCGATGTTGCTGAGGTCGTATGATGCAATTGCAATGTTGAGGGTTTTCTGAGTGGATCGATAGTCGGGACTATTTTCTCTCCTACGATACATATCCTTTTGCTTTGCAACGACATCGCTTCGTTTGCGGCCATTTTCGCGGCTAAAACAAGAGAATATATTGACTTATTGGCGTACCTGGACGAAGAACAGGTCCAGAGAAGTTTTTCTTCTCGGTTTCGAGCTTTTTGCATTGTGATAATACACCAAGAAGCGTCTGTTTGCTTTCGTCCACGAGGTATTGAGGTTGCTTCTTCTTGAAATTTG_-_ATGCGCGAGGGCTTCCGAAAGGTTCCAGTCATGGGACGGAAGCAGAAATGCACGGTGTTCAACAATACTCGAAAAGATTATAACGGCTTTATGTTCCTTGCGGCGTTTATTACAGCGGGTTTTCTTGTCAGCTCAGTTATTGCTGCAGAAGAAGCGGTAAAGTTAGGAACTGTGATTGGTATTGATCTTGGAACTACATACTCCTGTGTGGGTGTTTATAAAAATGGTCATGTTGAAATCATAGCAAATGACCAAGGAAATAGGATTACACCTTCTTGGGTTGCCTTTACTGATACCGAAAGACTCATTGGAGAGGCCGCCAAAAATCAGGCGGCTATGAACCCTGACAGGACTGTTTTTGATGTGAAACGATTGATTGGTAGGAAGTATGAAGACAAGGAGGTCCAAAGAGACGTCAAACTTCTGCCCTACAAAATTGTAAATAAAGATGGGAAACCTTATATCCAGGTGAAGATTAGGGATGGTGAAATCAAAGTTTTCAGTCCTGAGGAAATCAGTGCAATGATTTTGTTGAAAATGAAGGAGACAGCGGAGGCCTACCTTGGGAAGAAAATCAAGGATGCAGTAGTTACTGTTCCAGCATATTTCAATGATGCCCAAAGACAGGCAACCAAGGATGCCGGTGTAATTGCTGGGCTAAATGTTGCTCGTATAATAAATGAACCAACAGCTGCAGCAATTGCATATGGATTGGATxxxxxxxxxxxxxxxxxxxxxATTCTTGTTTATGACCTTGGAGGTGGAACTTTTGATGTTAGTATTCTCACCATTGATAATGGTGTCTTTGAAGTGCTGTCAACCAGCGGGGACACTCATTTAGGAGGAGAGGACTTCGATCAACGAATTATGGATTACTTCATAAAATTGGTCAAGAAAAAACACAACAAAGATATTAGCAAGGACAACAGAGCTCTCGGCAAACTTAGGAGAGAGTGTGAGAGGGCGAAAAGAGCTCTGAGCAGCCAGCACCAAGTTCGTGTTGAAATTGAATCACTTTTTGATGGCATTGATTTTTCAGAACCATTAACAAGAGCAAGATTCGAGGAACTCAATATGGACCTCTTCAAGAAAACAATGGGGCCAGTAAAGAAGGCTCTAGATGATGCCAACTTGCAGAAGACTGAGATCAATGAAATTGTGCTTGTTGGAGGAAGTACTCGCATACCAAAGGTCCAGCAATTATTGAAGGACTTCTTTGATGGCAAGGAGCCCAACAAAGGTGTTAATCCAGATGAAGCCGTGGCTTACGGGGCTGCGGTTCAGGGTGGTATTCTGAGTGGTGAGGGAGGTGACGAAACAAAAGATATTCTTCTATTGGATGTTGCTCCTCTCAGTCTAGGTATCGAAACTGTTGGAGGAGTAATGACCAAACTAATTCCAAGGAACACTGTCATACCAACAAAGAAGTCACAAGTGTTCACAACTTATCAAGATCAACAAACCACTGTTTCAATCAAGGTTTATGAAGGGGAGCGGAGTCTAACAAAGGACTGCCGAGAATTAGGCAAATTTGATCTGTCTGGAATCCCTCCAGCTCCTCGTGGTGTGCCACAGATTGAGGTTACCTTTGAGGTTGATGCCAACGGTATCCTTAATGTAAGAGCAGAGGACAAGGGCACCAAGAAATCAGAGAAGATCACCATAACAAATGACAAAGGCCGGTTGAGCCAGGAAGAAATAGACAGGATGGTCAAGGAGGCAGAGGAGTTTGCAGAGGAGGATAAGAAAGTCAAGGAAAGAATTGATGCAAGGAACAATCTTGAAACATACGTCTACAACATGAAAAGCACCATCAATGAGAAGGACAAATTGGCAGATAAAATTGATTCTGATGACAAGGAAAAGATTGAAGAGACACTCAAAGAAGCACTGGATTGGCTTGATGAAAACCAGTCGGCTGAGAAGGACGACTTCGAGGAGAAGTTGAAAGAGGTCGAAGCTGTATGTAACCCCGTCATTAAGAAAGTATACGAGAAAACTGGAGGACCTTCTGGAGGTGATGAAGAAGAAGAAGATGACTCACACGAGGAGCTCTAA___ACAAGTTCAGTTTTCCACTCAATTTTAGTCCGCACAGTTCACGATGAACAAATTTTACAAGGGAGGTCTTTGAGCTCAATAGGGTTATGAGAACAGCATTTTTGACGATGATTGGCAAGAACAAAATATTCAAATGAAAGTCAAATGACGATCTGTTTGTTTTTTCTATCAATCAGAATGTTATTTCAGAGAATTTTCAATTTATTCTTGGCATGTAGAGGCCCTTGTTAATGTGCCTTTCTTTTTTAAAGAAAGTTGTCACTTATTCGTGAATGAAGTTTGCGTTTTTGTGTTCCTTTTCCATTGATCCCTATCCTTATTTTATCTCTAGCCCTAGGAAGTATTTGCCACAAGAACTATTAGAGTTAGAGAATGCTTAGATCCTTTCATATTATAGCTCATTATTTTGCACACAAGAGATGTACAATTGAGCAATTTTAGTGATAGTGTTACCTGTACCTTGCCCGAATGATAACGTAGCATAGAACATT

Fln Alignment:

Contig4289___MREGFRKVPVMGRKQKCTVFNNTRKDYNGFMFLAAFITAGFLVSSVIAAEEAVKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAMNPDRTVFDVKRLIGRKYEDKEVQRDVKLLPYKIVNKDGKPYIQVKIRDGEIKVFSPEEISAMILLKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKxxxxxNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDQRIMDYFIKLVKKKHNKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNMDLFKKTMGPVKKALDDANLQKTEINEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGKFDLSGIPPAPRGVPQIEVTFEVDANGILNVRAEDKGTKKSEKITITNDKGRLSQEEIDRMXXXXXXXXXXXXXXXXRIDARNNLETYVYNMKSTINEKDKLAXXXXXXXXXXXXXTLKEALDWLDENQSAEKDDFEEKLKEVEAVCNPVIKKVYEKT
B8LS17_________________MREGFGKAPAMGRKQKCTVFNSTGKDFNGFMFLAAFIIAGFLVSSVIAAEEAAKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAMNPERTVFDVKRLIGRKYEDKEVQRDVKLLPYKIVNKDGKPYIQVKIRDDEIKVFSPEEISAMILLKMKETAESYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKxxxxxNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDQRIMDYFIKLVKKKHNKDISKDKRALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDANLQKTEINELVLVGGSTRIPKVQQLLKDLFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGKFDLSGIPPAPRGVPQIEVTFEVDANGILNVRAEDKGTKKSEKITITNDKGRLSQEEIDRMVKEAEEFAEEDKKVKERIDARNNLETYVYNMKSTINEKDKLADKIDSEDKEKIEDALKEALDWLDENQSAEKDDFEEKLKEVEAVCSPIIKKVYEKT

SSRs (tot: 1)

Start position	End position	Sequence	Length
2368	2381	GAA GAA GAA GAA GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain