SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4284

Length: 456 nt

UniGene Fasta

>biog2_v2.0_unigene4284
AGACAAGGCTGGGAATATTAATGAAAATTTAGAGAGGCTTAAGATCAGAAAAGGGGATGCATTGGCTGTGCATTGGTTACAGCATTCTCTATATGATGTCACAAGCTCTGATATCAGTACATTATGCCTTCTAAGGAGGCTTTGTCCAAAGGTTATCACAATGGTAGAACAAGATCTGAGCCATGTTGGGTCTTTTTTAAACAGATTTGTGGAGGGAATACATTATTATTCTGCTGTGTTTGATTCTCTAGGTGCAGCTTATCCTGAGGATAGCCATGAGAGGCATGTTGTGGAACAACAACTGCTTTCATGCGAGATCAAGAATATTCTGGCAGTTGGTGGGCCTGCAAGAACTGGTGAAGTAAGATTCCACAACTGGAGAGACCAGCTGCAACAAGCTGGGTTCAGCAAGCTTTCTCTTGCTGGAAATGCAGCAGCACAAGCCACACTTCTCCT

Ace file of the UniGene biog2_v2.0_unigene4284

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2245	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	SCARECROW n=1 Tax=Pinus sylvestris RepID=Q0MRQ2_PINSY	-	-	76%
FL-Next	tr=SCARECROW; Pinus sylvestris (Scots pine).	-	-	76%
Blast2go	gras family transcription factor	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of protein location in nucleus	GO:0051457	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	asymmetric cell division	GO:0008356	Biological Process	84%
Blast2go	radial pattern formation	GO:0009956	Biological Process	84%
Blast2go	gravitropism	GO:0009630	Biological Process	84%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%
Blast2go	flagellum	GO:0019861	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3		IPR017909	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Flagellar basal body rod protein, conserved site	IPR019776	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q0MRQ2

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 151 - 842

Fln protein: DKAGNINENLERLKIRKGDALAVHWLQHSLYDVTSSDISTLCLLRRLCPKVITMVEQDLSHVGSFLNRFVEGIHYYSAVFDSLGAAYPEDSHERHVVEQQLLSCEIKNILAVGGPARTGEVRFHNWRDQLQQAGFSKLSLAGNAAAQATLL

Protein Length: 152

Fln nts: AGACAAGGCTGGGAATATTAATGAAAATTTAGAGAGGCTTAAGATCAGAAAAGGGGATGCATTGGCTGTGCATTGGTTACAGCATTCTCTATATGATGTCACAAGCTCTGATATCAGTACATTATGCCTTCTAAGGAGGCTTTGTCCAAAGGTTATCACAATGGTAGAACAAGATCTGAGCCATGTTGGGTCTTTTTTAAACAGATTTGTGGAGGGAATACATTATTATTCTGCTGTGTTTGATTCTCTAGGTGCAGCTTATCCTGAGGATAGCCATGAGAGGCATGTTGTGGAACAACAACTGCTTTCATGCGAGATCAAGAATATTCTGGCAGTTGGTGGGCCTGCAAGAACTGGTGAAGTAAGATTCCACAACTGGAGAGACCAGCTGCAACAAGCTGGGTTCAGCAAGCTTTCTCTTGCTGGAAATGCAGCAGCACAAGCCACACTTCTCCT

Fln Alignment:

Contig4284___DKAGNINENLERLKIRKGDALAVHWLQHSLYDVTSSDISTLCLLRRLCPKVITMVEQDLSHVGSFLNRFVEGIHYYSAVFDSLGAAYPEDSHERHVVEQQLLSCEIKNILAVGGPARTGEVRFHNWRDQLQQAGFSKLSLAGNAAAQATLL
Q0MRQ2_________________DKVGKLDP--ERLKVNRGDALAVHWLHHSLYDVTGSDTNTLRLLQRLSPKVITVVEQDLSHGGSFLSRFVEAIHYYSALFDSLGASYPEDSHDRHLVEQQLLSREIKNILAVGGPARTGEIKFDNWRDQLKQTGFKPISLAGNAATQATLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain