SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4232

Length: 332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4232
ATGGGGAGGCTATTGAAGATGATACACAATTGAAGTTTGAAGAGTATGAAAGATCGTGGGAGCAGAACGAGGAGCTTGGCCTGAATGACATGGACACATCTTCAGCAGATGTTGCATATACATGAGCCGGTGGTATGTTGTAGGTAACTGGATCAAATTTCAGGAGAAACTCTGGGATGGTTGGCACTGTCAATGCTAAATGTTGTACTTCAAATTCGTTTAGGAATTTCCAGTTCTACAGCCGACAGTTTTCCAAGGGAGGGCACTCCAAGGCATTGTATACTTGTAAGATCGTCAAAGTTTAGTCTTGATCCTATATTTGATCTATAAAA

Ace file of the UniGene biog2_v2.0_unigene4232 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25590	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gb\|AED93032.1\| ZPR1 zinc-finger domain protein [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	81%
Blast2go	zpr1 zinc-finger domain protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, ZPR1-type	IPR004457	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F2E3M7

Fln msg: your sequence is shorter than subject: 41 - 497

Fln protein: GEAIEDDTQLKFEEYERSWEQNEELGLNDMDTSSADVAYT*

Protein Length: 42

Fln nts: ATGGGGAGGCTATTGAAGATGATACACAATTGAAGTTTGAAGAGTATGAAAGATCGTGGGAGCAGAACGAGGAGCTTGGCCTGAATGACATGGACACATCTTCAGCAGATGTTGCATATACATGA___GCCGGTGGTATGTTGTAGGTAACTGGATCAAATTTCAGGAGAAACTCTGGGATGGTTGGCACTGTCAATGCTAAATGTTGTACTTCAAATTCGTTTAGGAATTTCCAGTTCTACAGCCGACAGTTTTCCAAGGGAGGGCACTCCAAGGCATTGTATACTTGTAAGATCGTCAAAGTTTAGTCTTGATCCTATATTTGATCTATAAAA

Fln Alignment:

Contig4232___EAIEDDTQLKFEEYERSWEQNEELGLNDMDTSSADVAY
F2E3M7_________________DSLEDDKQLTIEEYERSWEQNEELGLNDMDTSSADMAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain