SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4228

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4228
CCCCACCCGTAGACAGATATAGCGCAGATCAGATATCTTATTCGGTGGAATCTTTATGCAATGGGGGTTGGATTTTGAATCTGTGACAGAGGCAACTTCAGGAGCCATAGGAGGGATCGTGAGCACTACGATATTGTATCCCTTAGATACATGTAAGACAAAGTACCAGGCAGAGGTTCAAGCCGGGGGTCGACAGAAATACAGACATCTATCTGATGTGTTGTGGGAGGCTGTTTCCACTAGGCAAATTCATTCTTTGTATCAGGGCCTTGGCACCAAAAATTTACAATCATTCATATCTCAATTTATTTACTTTTATAGCTATAGTTACTTTAAGAGATTTTACTTG

Ace file of the UniGene biog2_v2.0_unigene4228 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9681	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial FAD carrier [Cucumis melo subsp. melo]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2K8

Fln msg: Distance to subject end: 231 aas, your sequence is shorter than subject: 98 - 327

Fln protein: MQWGLDFESVTEATSGAIGGIVSTTILYPLDTCKTKYQAEVQAGGRQKYRHLSDVLWEAVSTRQIHSLYQGLGTKNLQSFISQFIYFYSYSYFKRFYL

Protein Length: 99

Fln nts: CCCCACCCGTAGACAGATATAGCGCAGATCAGATATCTTATTCGGTGGAATCTTT_-_ATGCAATGGGGGTTGGATTTTGAATCTGTGACAGAGGCAACTTCAGGAGCCATAGGAGGGATCGTGAGCACTACGATATTGTATCCCTTAGATACATGTAAGACAAAGTACCAGGCAGAGGTTCAAGCCGGGGGTCGACAGAAATACAGACATCTATCTGATGTGTTGTGGGAGGCTGTTTCCACTAGGCAAATTCATTCTTTGTATCAGGGCCTTGGCACCAAAAATTTACAATCATTCATATCTCAATTTATTTACTTTTATAGCTATAGTTACTTTAAGAGATTTTACTTG

Fln Alignment:

Contig4228___GLDFESVTEATSGAIGGIVSTTILYPLDTCKTKYQAEVQAGGRQKYRHLSDVLWEAVSTRQIHSLYQGLGTKNLXXXXXXXXXXXXXXXFKRFYL
A9P2K8_________________GVDFESVTEATSGAIGGLVSTTILYPLDTCKTKYQAEVHAGDRQKYRHLSDVLREAISTRQIGSLYQGLGTKNLQSFISQFIYFYSYSYFKRFYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain