SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4221

Length: 393 nt

UniGene Fasta

>biog2_v2.0_unigene4221
TGCTGATTTTGTCCACGCTTTTATGCTTGGTTTTGATGTACCTGATGCCATTGCGCTTTTGAGGTTGGATGATCTGTATGTTGAGACATTTGAGATTAAGGATGTGAAAACTCTGCAAGGAGAGCATCTTTCTCGAGCTATTGGCAGGTTAAGTGGAAAAGGCGGAAAGACAAAATTTGCAATTGAGAATTCAACAAGAACAAGAATTGTCATTGCTGAGTCAAAGATTCACATATTGGGATCTTTCTTGAATATTAAAGTTGCTAGAGATGCTTTATGTAGCCTTATTTTAGGATCTCCTGCAGGCAAGGTCTACTCAAAACTGAGAGCAGTGACTGCAAGAATGGCAGAGAAATTTTAAGATCCTCGGCTATGTTAGCGTATTTCACCTTT

Ace file of the UniGene biog2_v2.0_unigene4221

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6249	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative partner of Nob1 [Oryza sativa Japonica Group] dbj\|BAB90119.1\| putative partner of Nob1 [Oryza sativa Japonica Group] gb\|EEE55513.1\| hypothetical protein OsJ_03725 [Oryza sativa Japonica Group]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	partner of nob1	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	K Homology domain	IPR004087	-	0.0	-
Sma3		IPR018111	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS94

Fln msg: your sequence is shorter than subject: 120 - 234

Fln protein: ADFVHAFMLGFDVPDAIALLRLDDLYVETFEIKDVKTLQGEHLSRAIGRLSGKGGKTKFAIENSTRTRIVIAESKIHILGSFLNIKVARDALCSLILGSPAGKVYSKLRAVTARMAEKF*

Protein Length: 121

Fln nts: TGCTGATTTTGTCCACGCTTTTATGCTTGGTTTTGATGTACCTGATGCCATTGCGCTTTTGAGGTTGGATGATCTGTATGTTGAGACATTTGAGATTAAGGATGTGAAAACTCTGCAAGGAGAGCATCTTTCTCGAGCTATTGGCAGGTTAAGTGGAAAAGGCGGAAAGACAAAATTTGCAATTGAGAATTCAACAAGAACAAGAATTGTCATTGCTGAGTCAAAGATTCACATATTGGGATCTTTCTTGAATATTAAAGTTGCTAGAGATGCTTTATGTAGCCTTATTTTAGGATCTCCTGCAGGCAAGGTCTACTCAAAACTGAGAGCAGTGACTGCAAGAATGGCAGAGAAATTTTAA___GATCCTCGGCTATGTTAGCGTATTTCACCTTT

Fln Alignment:

Contig4221___ADFVHAFMLGFDVPDAIALLRLDDLYVETFEIKDVKTLQGEHLSRAIGRLSGKGGKTKFAIENSTRTRIVIAESKIHILGSFLNIKVARDALCSLILGSPAGKVYSKLRAVTARMAEKF
A9NS94_________________ADFVHAFMLGFDVPDAIALLRLDDLYVETFEIKDVKTLQGEHLSRAIGRLSGKGGKTKFAIENSTRTRIVIAESKIHILGSFLNIKVARDALCSLILGSPAGKVYSKLRAVTARMAEKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain