SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4169

Length: 2330 nt

UniGene Fasta

>biog2_v2.0_unigene4169
AAACATGGGGAATTCAGTTCGACAGCGTTGTTTTGCTAAGTGAGCAAGGAATACAGAACGTCTTGTTTCAATTTTCTTGTGTATTCGTGTGGTTTGTTTTGATTCTGCTGTGATTTGAAGTTCTGACGATGGCTAGTAGCGAAGGGAAGGCGATTGGAATCGATCTGGGAACAACCTACAGTTGCGTGGGTGTTTGGCACCACGACCGTGTGGAAATAATTCCCAATGATCAAGGTAACAGAACGACTCCTTCCTATGTTGCTTTTACTGATACCGAGCGTCTAATTGGGGACGCTGCCAAGAATCAAGTGGCCATGAATCCCCAGAACACGGTCTTTGACGCTAAAAGATTGATCGGCAGGCGCTTCAGCGATGCCCCTGTGCAAAACGACATGAAGCTCTGGCCTTTTAAAGTATTACCTGGCCCTGGGGATAAGCCTATGATTGAGGTCAGCTACAAAGGCGAGAAGAAGCAATTCTCTCCTGAAGAAATTTCGTCTATGGTCCTTTCCAAGATGAGGGAGATTGCAGAGGCTTTTCTTGGTCAGAGTGTAAAGAATGCTGTGGTTACTGTTCCTGCCTATTTCAATGACTCGCAGAGGCAGGCGACCAAGGATGCTGGTCTCATTGCTGGCTTAAATGTGTTGAGGATTATTAATGAGCCCACAGCTGCTGCCATTGCTTATGGGCTCGACAAGAAGGCCAGTTCTACTAGAGAAAAGAATGTGCTCATCTTTGATTTGGGAGGAGGAACGTTCGATGTCTCAATTTTGACGATTGAAGAGGGAATCTTTGAAGTGAAGGCCACTGCTGGAGATACTCACTTGGGAGGCGAGGATTTTGATAACAGAATGGTGAATCACTTTGTGCAGGAATTCAAAAGAAAGCACAGAAAAGACATCAGCGGGAACGCCAGAGCTCTTCGCAGGCTGAGAACAGCATGTGAGAGGGCAAAAAGAACGCTCTCTTCTACTACACAGACAACGATTGAGATTGATTCTCTATATGAAGGAATTGATTTTTACGCCACAATTACTCGAGCTCGCTTCGAGGAACTCAACATGGATCTGTTCAGGAGAAGTATGGAGCCTGTGGAGAAATGTATGCGAGATGCTAAGATGGACAAGAGCCAAATAGATGATGTTGTCTTGGTCGGGGGTTCGACTCGTATCCCGAAAGTACAACAATTGCTCCAAGATTTCTTCAATGGCAAAGAGCTTTGTAAGAGCATTAACCCAGACGAAGCCGTGGCATATGGTGCAGCTGTGCAGGCTGCCATTCTGAGCGGCGAAGGCAACGAGAAGGTGCAGGACCTGCTGTTGCTAGATGTCACTCCATTAAGTCTGGGGTTGGAAACAGCGGGAGGTGTAATGACAGTATTAATACCGAGGAACACCACCATTCCCACCAAGAAGGAGCAGATTTTCTCAACTTACTCAGATAATCAGCCTGGGGTTTTAATTCAAGTATATGAAGGTGAGCGAGCGCGGACGAAGGACAATAACCTGCTCGGCAAATTCGAGCTCACAGGAATTCCGCCGGCTCCTAGAGGTGTCCCGCAGATTAATGTCTGCTTTGACATAGATGCAAACGGCATCCTCAACGTTTCTGCTGAAGACAAGACCGCGGGAGTGAAGAACAAGATTACTATCACAAACGACAAGGGTCGGTTGAGCAAAGAAGAGATCGAGAAAATGGTGCACGATGCGGAGAAGTACAAGGCCGAGGATGAGGAGGTCAAGAAGAAGGTTGATGCCAAGAATGCCCTCGAGAACTATGCCTACAATATGCGAAACACCATCCGAGACGAGAAGTTTGCCGGTAAATTAGATCCGGCAGACAAATCCAAGATCGAGGAGGCTATTAATGGTGCCATCAGCTGGCTTGATCAGAACCAGTTGGCCGAGGTTGATGAGTTTGAAGACAAGACGAAGGAACTGGAGGGCATCTGCAATCCTATCATTGCTAAAATGTATCAGGGGGGAGCTGCTCCAATGGGAGGTGAAGATGATGATATTCCCACTTCTGGTGGTGCTGGTGCTGGTTCTGGTTCTGGTGGCCGAGGCCCCAAGATCGAAGAAGTAGATTAAATTGTTAATGTTCTTTCACTTTTTATTTTCTAGTATGTAAATTTTTCTACTATATATTTAGGTAGATATGTAGAGATATAAGGGTGTCTTAGATTGAGGGTTCAGTGGCATTTTTCTTTAAAATGCATTTCGAGAGATGTTTATGTGAAACTGCAATATTGCATTCTGAAGATAGGTGTATTGTCACCTTCTTTGTGTGTGTAAAAATGGTTGAGTTTTATAATACTGAATAATTTTTCT

Ace file of the UniGene biog2_v2.0_unigene4169

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23725	207/209

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein n=3 Tax=rosids RepID=HSP70_SOYBN	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	heat shock	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg:

Fln protein: MASSEGKAIGIDLGTTYSCVGVWHHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDAPVQNDMKLWPFKVLPGPGDKPMIEVSYKGEKKQFSPEEISSMVLSKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKASSTREKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHRKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRSMEPVEKCMRDAKMDKSQIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVHDAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIRDEKFAGKLDPADKSKIEEAINGAISWLDQNQLAEVDEFEDKTKELEGICNPIIAKMYQGGAAPMGGEDDDIPTSGGAGAGSGSGGRGPKIEEVD*

Protein Length: 655

Fln nts: AAACATGGGGAATTCAGTTCGACAGCGTTGTTTTGCTAAGTGAGCAAGGAATACAGAACGTCTTGTTTCAATTTTCTTGTGTATTCGTGTGGTTTGTTTTGATTCTGCTGTGATTTGAAGTTCTGACG_-_ATGGCTAGTAGCGAAGGGAAGGCGATTGGAATCGATCTGGGAACAACCTACAGTTGCGTGGGTGTTTGGCACCACGACCGTGTGGAAATAATTCCCAATGATCAAGGTAACAGAACGACTCCTTCCTATGTTGCTTTTACTGATACCGAGCGTCTAATTGGGGACGCTGCCAAGAATCAAGTGGCCATGAATCCCCAGAACACGGTCTTTGACGCTAAAAGATTGATCGGCAGGCGCTTCAGCGATGCCCCTGTGCAAAACGACATGAAGCTCTGGCCTTTTAAAGTATTACCTGGCCCTGGGGATAAGCCTATGATTGAGGTCAGCTACAAAGGCGAGAAGAAGCAATTCTCTCCTGAAGAAATTTCGTCTATGGTCCTTTCCAAGATGAGGGAGATTGCAGAGGCTTTTCTTGGTCAGAGTGTAAAGAATGCTGTGGTTACTGTTCCTGCCTATTTCAATGACTCGCAGAGGCAGGCGACCAAGGATGCTGGTCTCATTGCTGGCTTAAATGTGTTGAGGATTATTAATGAGCCCACAGCTGCTGCCATTGCTTATGGGCTCGACAAGAAGGCCAGTTCTACTAGAGAAAAGAATGTGCTCATCTTTGATTTGGGAGGAGGAACGTTCGATGTCTCAATTTTGACGATTGAAGAGGGAATCTTTGAAGTGAAGGCCACTGCTGGAGATACTCACTTGGGAGGCGAGGATTTTGATAACAGAATGGTGAATCACTTTGTGCAGGAATTCAAAAGAAAGCACAGAAAAGACATCAGCGGGAACGCCAGAGCTCTTCGCAGGCTGAGAACAGCATGTGAGAGGGCAAAAAGAACGCTCTCTTCTACTACACAGACAACGATTGAGATTGATTCTCTATATGAAGGAATTGATTTTTACGCCACAATTACTCGAGCTCGCTTCGAGGAACTCAACATGGATCTGTTCAGGAGAAGTATGGAGCCTGTGGAGAAATGTATGCGAGATGCTAAGATGGACAAGAGCCAAATAGATGATGTTGTCTTGGTCGGGGGTTCGACTCGTATCCCGAAAGTACAACAATTGCTCCAAGATTTCTTCAATGGCAAAGAGCTTTGTAAGAGCATTAACCCAGACGAAGCCGTGGCATATGGTGCAGCTGTGCAGGCTGCCATTCTGAGCGGCGAAGGCAACGAGAAGGTGCAGGACCTGCTGTTGCTAGATGTCACTCCATTAAGTCTGGGGTTGGAAACAGCGGGAGGTGTAATGACAGTATTAATACCGAGGAACACCACCATTCCCACCAAGAAGGAGCAGATTTTCTCAACTTACTCAGATAATCAGCCTGGGGTTTTAATTCAAGTATATGAAGGTGAGCGAGCGCGGACGAAGGACAATAACCTGCTCGGCAAATTCGAGCTCACAGGAATTCCGCCGGCTCCTAGAGGTGTCCCGCAGATTAATGTCTGCTTTGACATAGATGCAAACGGCATCCTCAACGTTTCTGCTGAAGACAAGACCGCGGGAGTGAAGAACAAGATTACTATCACAAACGACAAGGGTCGGTTGAGCAAAGAAGAGATCGAGAAAATGGTGCACGATGCGGAGAAGTACAAGGCCGAGGATGAGGAGGTCAAGAAGAAGGTTGATGCCAAGAATGCCCTCGAGAACTATGCCTACAATATGCGAAACACCATCCGAGACGAGAAGTTTGCCGGTAAATTAGATCCGGCAGACAAATCCAAGATCGAGGAGGCTATTAATGGTGCCATCAGCTGGCTTGATCAGAACCAGTTGGCCGAGGTTGATGAGTTTGAAGACAAGACGAAGGAACTGGAGGGCATCTGCAATCCTATCATTGCTAAAATGTATCAGGGGGGAGCTGCTCCAATGGGAGGTGAAGATGATGATATTCCCACTTCTGGTGGTGCTGGTGCTGGTTCTGGTTCTGGTGGCCGAGGCCCCAAGATCGAAGAAGTAGATTAA___ATTGTTAATGTTCTTTCACTTTTTATTTTCTAGTATGTAAATTTTTCTACTATATATTTAGGTAGATATGTAGAGATATAAGGGTGTCTTAGATTGAGGGTTCAGTGGCATTTTTCTTTAAAATGCATTTCGAGAGATGTTTATGTGAAACTGCAATATTGCATTCTGAAGATAGGTGTATTGTCACCTTCTTTGTGTGTGTAAAAATGGTTGAGTTTTATAATACTGAATAATTTTTCT

Fln Alignment:

Contig4169___MASSEGKAIGIDLGTTYSCVGVWHHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDAPVQNDMKLWPFKVLPGPGDKPMIEVSYKGEKKQFSPEEISSMVLSKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKASSTREKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHRKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRSMEPVEKCMRDAKMDKSQIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVHXXXXXXXXXXXXXXXXXXXNALENYAYNMRNTIRDEKFAGKLDPADKSKIEEAINGAISWLDQNQLAEVDEFEDKTKELEGICNPIIAKMYQGGAAPMGGEDDDIPTXXXXXXXXXXXXXXPKIEEVD
A9NXU2_________________MATSEGKAIGIDLGTTYSCVGVWQHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRITDASVQSDMKLWPFKVLSGPGDKPMIEVIYKGEKKQFSPEEISSMVLIKMREIAEAFLGQTVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKATSTKEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRSMEPVEKCMRDAKMDKSQIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVHDAEKYKAEDEEVKKKVDAKNSLENYAYNMRNTVRDEKFAGKLDPADKAKIEEAINGAISWLDQNQLAEVDEFEDKMKELEGICNPIIAKMYQGGSAPMGADDDDIPT--SGGAGAGAGGRGPKIEEVD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
2242	20	80			0.995493
2246	80		20		0.995493
2247	80		20		0.995493
2265	85		14		0.993533
2295	75			25	0.996473
2296	75		25		0.996473
2297	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain