SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4165

Length: 2028 nt

UniGene Fasta

>biog2_v2.0_unigene4165
TAAGGGTCAACCTGGATGGGATTGACACAGTCAGTCACTCTTATTTCGGGCCATTAATGAAAACCTTGCCACTATAATTCCTCCCCGGGCATAGGCACCACCCGCGCCGGTTCATATAAACCCTCCGCTGTAACGCCATTCGCGTGAATACTTTTTTAGATCACAGAACAAATCTTACAATTTTTGTCGATCAATTTCCTTAGAGGGCCATGGATGAGGAATACGATGTGATAGTGCTGGGCACTGGTCTGAAAGAATGCATCCTCAGCGGTCTCCTTTCTGTGGATCGGCTCAAGGTCCTCCACATGGACAGAAATGATTACTATGGAGGAGATTCTACTTCTCTTAATCTCATCCAGCTTTGGAAGAAGTTCCGAGGTAACGATAAGCCTCCTGCTCATCTCGGATCCAGTAGAGACTACAATGTTGATATGATCCCTAAGTTTATGATGGCAAATGGTAGTTTGGTGCGAGTCCTCATTCACACAGATGTTACAAAATATTTGTATTTTAAGGCTGTGGACGGTAGTTATGTATACAATAAAGGAAAGATATACAAAGTCCCAGCGACTGATGTGGAAGCTCTAAAATCTCCTCTTATGGGAATATTTGAAAAGCGTCGTGCTAGAAAGTTCTTTATTTATGTTCAAAATTATGACGAGAATGATCCAACAACACATGATGGCATGGACTTGACAAGAGTAACAGCAAGAGAACTTATTGCGAAATATGGATTAGATGATAATACTGTAGATTTCATTGGCCATGCATTGGCACTTCATCGGGATGACCGTTATCTATATGAGCCTGCATTAGAGACTGTAAAAAAATAAAGCTATACGAAGAATCTCTTGCTCGTTTTCAAGGAGGGTCGCCATACATATACCCATTGTATGGGTTGGGTGAACTACCTCAGGGATTTGCACGTCTTAGTGCTGTCTATGGAGGAACATACATGCTGAACAAACCGGAGTGCAAGGTTGAGTTTGATGAAGAAGGTAAGGTGTGTGGTGTGACATCTGAAGGGGAGACAGCCAGATGCAAAAAAGTAGTTTGTGATCCATCATATTTACCTAACAAGGTCAAGAAAATTGGAAAGGTTGCTCGTGCAATTTGTGTAATGAGCCACCCTATCCCAAACACAAATGACTCCCAATCAGTACAGATAATTCTGCCTCAGAAGCAACTTGGACGCAAGTCTGACATGTATGTATTTTGCTGTTCTTATTCACATAATGTTGCTCCCAAAGGGAAGTACATTGCTTTTGTTTCGGCTGAGGCAGAAACAGATCAACCAGAGGTAGAATTGCAACCGGGAATAGCTCTTCTTGGACCTGTTGATGAGATGTTCTTTGATACATATGATAGATTTGCTCCTGTTAATGAGCCTTCTCTTGACAATTGCTTCATATCCACTAGCTATGATGCGACAACACATTTTGAGACAACTGTGCAGGATGTTCTTGCCATGTACACCAACATAACTGGAAAGGTTTTGGACCTAAGTGTTGACCTAAGTGCTGCAAGTGCGGCTGAAGAATAATGGGCTGTAGCATATCAACCTTTAGTTGGGTTACACATTCCTCTAAGGCTGTACTTGTTTTGATATGATCTACAGTGTGTTGAAGTTTTAGTGTTTGTATGTATTTGGGAATCACGCCTTTACCTGGTGTTTTAATATCTGGAATGTTCAGGTCCAGACATAGAACACTGTTTTTTCAGCTGTTCATTCAAATCACTGGCTTTTATATCATTGATATGTATGAATTTGTCTGCAATAATTGTTCAGTGTTCAGTTTGATAGGAAGACAAGACGTAGAGGTTCTGACTGTGGGTGTTGGTAATCATGTAATATTTTCATCCATGCTTGAAACTCTGCTATGATTTATGGTGCGGGATATTAGTATTTAATCATAAAAATCACTAATATTCAGATGGTAATTTGTATTTGAAGTGAACAAGGTGCTTCACCTACGAGAACATCATGGATACTTAAAAGTAATCCCATATATCCATATTAAATAATAG

Ace file of the UniGene biog2_v2.0_unigene4165

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16032	77/80
SustainPine v2.0	sp_v2.0_unigene61647	3/80

Source	Descriptions	Term	Type	Identity
AutoFact	GDP dissociation inhibitor protein OsGDI1 [Oryza sativa]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Rab GDI protein	IPR000806	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3		IPR002005	-	-
Sma3	GDP dissociation inhibitor	IPR018203	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR2

Fln msg: Overlapping hits, possible frame ERROR between 872 and 824,

Fln protein: MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDENDPTTHDGMDLTRVTARELIAKYGLDDNTVDFIGHALALHRDDRYLYEPALETxxxxxxxxxxxxxxxxxxPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLPNKVKKIGKVARAICVMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEAETDQPEVELQPGIALLGPVDEMFFDTYDRFAPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTNITGKVLDLSVDLSAASAAEE*

Protein Length: 446

Fln nts: TAAGGGTCAACCTGGATGGGATTGACACAGTCAGTCACTCTTATTTCGGGCCATTAATGAAAACCTTGCCACTATAATTCCTCCCCGGGCATAGGCACCACCCGCGCCGGTTCATATAAACCCTCCGCTGTAACGCCATTCGCGTGAATACTTTTTTAGATCACAGAACAAATCTTACAATTTTTGTCGATCAATTTCCTTAGAGGGCC_-_ATGGATGAGGAATACGATGTGATAGTGCTGGGCACTGGTCTGAAAGAATGCATCCTCAGCGGTCTCCTTTCTGTGGATCGGCTCAAGGTCCTCCACATGGACAGAAATGATTACTATGGAGGAGATTCTACTTCTCTTAATCTCATCCAGCTTTGGAAGAAGTTCCGAGGTAACGATAAGCCTCCTGCTCATCTCGGATCCAGTAGAGACTACAATGTTGATATGATCCCTAAGTTTATGATGGCAAATGGTAGTTTGGTGCGAGTCCTCATTCACACAGATGTTACAAAATATTTGTATTTTAAGGCTGTGGACGGTAGTTATGTATACAATAAAGGAAAGATATACAAAGTCCCAGCGACTGATGTGGAAGCTCTAAAATCTCCTCTTATGGGAATATTTGAAAAGCGTCGTGCTAGAAAGTTCTTTATTTATGTTCAAAATTATGACGAGAATGATCCAACAACACATGATGGCATGGACTTGACAAGAGTAACAGCAAGAGAACTTATTGCGAAATATGGATTAGATGATAATACTGTAGATTTCATTGGCCATGCATTGGCACTTCATCGGGATGACCGTTATCTATATGAGCCTGCATTAGAGACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCATACATATACCCATTGTATGGGTTGGGTGAACTACCTCAGGGATTTGCACGTCTTAGTGCTGTCTATGGAGGAACATACATGCTGAACAAACCGGAGTGCAAGGTTGAGTTTGATGAAGAAGGTAAGGTGTGTGGTGTGACATCTGAAGGGGAGACAGCCAGATGCAAAAAAGTAGTTTGTGATCCATCATATTTACCTAACAAGGTCAAGAAAATTGGAAAGGTTGCTCGTGCAATTTGTGTAATGAGCCACCCTATCCCAAACACAAATGACTCCCAATCAGTACAGATAATTCTGCCTCAGAAGCAACTTGGACGCAAGTCTGACATGTATGTATTTTGCTGTTCTTATTCACATAATGTTGCTCCCAAAGGGAAGTACATTGCTTTTGTTTCGGCTGAGGCAGAAACAGATCAACCAGAGGTAGAATTGCAACCGGGAATAGCTCTTCTTGGACCTGTTGATGAGATGTTCTTTGATACATATGATAGATTTGCTCCTGTTAATGAGCCTTCTCTTGACAATTGCTTCATATCCACTAGCTATGATGCGACAACACATTTTGAGACAACTGTGCAGGATGTTCTTGCCATGTACACCAACATAACTGGAAAGGTTTTGGACCTAAGTGTTGACCTAAGTGCTGCAAGTGCGGCTGAAGAATAA___TGGGCTGTAGCATATCAACCTTTAGTTGGGTTACACATTCCTCTAAGGCTGTACTTGTTTTGATATGATCTACAGTGTGTTGAAGTTTTAGTGTTTGTATGTATTTGGGAATCACGCCTTTACCTGGTGTTTTAATATCTGGAATGTTCAGGTCCAGACATAGAACACTGTTTTTTCAGCTGTTCATTCAAATCACTGGCTTTTATATCATTGATATGTATGAATTTGTCTGCAATAATTGTTCAGTGTTCAGTTTGATAGGAAGACAAGACGTAGAGGTTCTGACTGTGGGTGTTGGTAATCATGTAATATTTTCATCCATGCTTGAAACTCTGCTATGATTTATGGTGCGGGATATTAGTATTTAATCATAAAAATCACTAATATTCAGATGGTAATTTGTATTTGAAGTGAACAAGGTGCTTCACCTACGAGAACATCATGGATACTTAAAAGTAATCCCATATATCCATATTAAATAATAG

Fln Alignment:

Contig4165___MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDENDPTTHDGMDLTRVTARELIAKYGLDDNTVDFIGHALALHRDDRYLYEPALETVxxxxxxxxxxxxxxxxSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLPNKVKKIGKVARAICVMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEAETDQPEVELQPGIALLGPVDEMFFDTYDRFAPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTNITGK
A9NWR2_________________MDEEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGESTSLNLTQLWKKFRGNDKPPAHLGPSRDYNVDMIPKFMMANGSLVRVLIHTDVTKYLYFKAVDGSYVYNKGKIYKVPATDVEALKSPLMGIFEKRRARKFFIYVQNYDQNDPKTHDGMDLTRVTTRELIAKYGLDDNTVDFIGHALALHRDDRYLFEPALETVxxxxxxxxxxxxxxxxSPYIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETARCKKVVCDPSYLTNKVRKVGKVARAICIMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSYSHNVAPKGKYIAFVSAEADTDQPEVELQPGIALLGPVDEMFFDTYDRFVPVNEPSLDNCFISTSYDATTHFETTVQDVLAMYTHITGK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
772	85		14		0.993533
793	12	87			0.992554
794		87		12	0.992554
796			12	87	0.992554
797			12	87	0.992554
902	12		87		0.992554
904			12	87	0.992554
981	71		28		1.0
1200	66		33		0.997452
1304			83	16	0.994512
1306			16	83	0.994512
1307	83		16		0.994512
1410		14		85	0.993533
1412		85	14		0.993533
1414			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain