SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4136

Length: 1632 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4136

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15598	36/49
SustainPine v2.0	sp_v2.0_unigene16107	2/49
SustainPine v2.0	sp_v2.0_unigene25508	10/49
SustainPine v2.0	sp_v2.0_unigene60459	1/49

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase 1 n=24 Tax=Tracheophyta RepID=METK1_VITVI	-	-	89%
FL-Next	sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	s-adenosylmethionine synthase-like isoform 1	-	-	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	S-adenosylmethionine synthetase	IPR002133	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH8

Fln msg:

Fln protein: MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDQIAADLKEHVIKPVVPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKVPDTEILQLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA*

Protein Length: 393

Fln nts: ATGGGGACTTTACTCTCGCGTTCATCTTCTAGCTCTTACGCACAGGAGAAAGGAGGGGATACCATTCATCTCTGTCTTAAGCTAAG_-_ATGGACACCTTTCTCTTCACATCAGAGTCTGTCAATGAGGGACACCCTGACAAGCTTTGTGATCAGGTTTCTGATGCCATCTTGGATGCTTGCTTGGAGCAAGATCCTGAAAGCAAGGTTGCATGCGAGACCTGTACAAAGACAAACATGGTAATGATCTTTGGAGAAATTACAACTAAAGCTAATATAGACTATGAGAAGATAGTGAGGGATACCTGTAGAGGAATTGGATTTGTGTCAGCGGATGTTGGCTTGGATGCAGACAATTGCAAGGTCCTGGTGAACATTGAACAGCAAAGCCCTGACATTGCACAGGGTGTCCATGGCCACCTTACCAAGAAGCCTGAAGAGATTGGTGCAGGAGATCAGGGCCACATGTTTGGGTATGCTACAGATGAGACCCCGGAGTTGATGCCTCTAACTCATGTGCTAGCAACAAAGCTTGGAGCACGGCTGACTGAAGTAAGAAAGAATGGAACCTGCCCTTGGTTGAGACCAGATGGAAAAACCCAAGTTACTGTTGAGTATAAAAATGAGGGAGGCGCAATGGTCCCGTTAAGAGTTCACACTGTTCTCATCTCTACCCAACATGATGAAACTGTTACAAACGATCAGATTGCAGCTGATCTCAAGGAACATGTCATTAAGCCCGTTGTTCCTTCTCAATACCTAGATGAAAATACAATATTCCATTTGAACCCATCTGGGCGTTTTGTAATTGGAGGGCCTCATGGAGACGCTGGACTCACTGGGAGGAAAATTATTATTGATACATATGGTGGTTGGGGTGCTCATGGTGGAGGAGCCTTTTCTGGAAAGGATCCCACCAAGGTGGATCGTAGCGGTGCCTACATTGTCAGACAAGCAGCCAAGAGTGTTGTTGCTGCCGGGCTAGCACGCCGCTGCCTTGTGCAGGTTTCATATGCCATTGGCGTGCCTGAGCCACTTTCTGTGTTTGTTGACACATATGGAACTGGAAAGGTTCCAGATACTGAAATCCTGCAGTTGATCAAGGAAAATTTTGACTTCCGCCCTGGCATGATATCTATCAATCTTGACCTTAAACGGGGAGGCAATATGAGGTTCCAGAAAACAGCTGCATATGGCCATTTTGGTCGGGAGGATCCTGATTTCACTTGGGAGACTGTAAAGGTCCTTAAGTGGGAGAAAGCTTGA___AACTGTGGAGTAAGAAGCAGAGGGATTTCTTTTAAAGTGGGCCACGTTTTGTAGGGTTCATTAGGGTTTACTATTTCTATGTCTGGCAACAAACTGTTGAATATGCCAACCTCAATTATGGGTTTCATATCTGATTCTTTGGATACGCGATGTAAGTGCTAGTGTTTTCAAGTCTGGCTCGAGCTAGGATTTCTATCATATTTTAATCGTCTTTAGATAATCTTTTGATTTTTATCAACTGCAATATGCAGAACCAACTGGGGATCTTGGTTCCCAATAGAAGTTTGGGATTTTGCTGTGATTGGGCTTTGTAATTGAATCTTGCGTTTTTAGATTTCACAAGTCTTTTTATCATTCTTCATATATTACT

Fln Alignment:

Contig4136___MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDQIAADLKEHVIKPVVPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTY--GTGKVPDTEILQLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA
A9NUH8_________________MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKDGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
804	33		66		0.997452
832	33			66	0.997452
835		33	66		0.997452
1021		20		80	0.995493
1069	50		50		1.0
1070	50		50		1.0
1074	50	50			1.0
1079	50		50		1.0
1087		50		50	1.0
1091	50	50			1.0
1102	44		55		1.0
1132	50			50	1.0
1141		50		50	1.0
1150	50			50	1.0
1167	33			66	1.0
1168	33		66		1.0
1186	33			66	1.0
1201		25		75	1.0
1237	88		11		0.923564
1241	11		88		0.923564
1245		12		87	0.992554
1246			12	87	0.992554
1433		20		80	0.995493
1434		80		20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain