SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4093

Length: 418 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4093
TTCGAGAGGAGTGCGGAAGTATACGATCCCAGTACAGGCGTTTGGAACAGGGTGGAGAATATGTGGAGTATTGGGGGATGCCCCAGGTCGTGTGTTGCTGAGTTTGGGAATTTGTATTTCTTCCATAGGCAACAAGTGATGTCTTATAATAGTAAAGAGAATGTTTGGGAAGTGGTGGCATCTCTTCCTGGAGATATGAATATTGTTACTTGCGCAACAGTGTGGTGTGACAAGATATTTGTGAGCGGTTCTGCTTGCAGTGGTGGCGATCAGGTGTGTTACATGCTGGACAAATCTTGGGCGTGGGCTCCTATTGAGAGGTCACATGAGTTTGAGGGTTTTGCTCAGTCTGCAATAACTGTAGAGATGTGAGCAGATTCTGGTGGGTCCACTTAATTTTGGGATTATAATAGTGCCG

Ace file of the UniGene biog2_v2.0_unigene4093 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6859	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing F-box-like [Oryza sativa Japonica Group] dbj\|BAD25009.1\| kelch repeat-containing F-box-like [Oryza sativa Japonica Group]	-	-	2.0e-23	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	f-box kelch-repeat protein	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRS6

Fln msg: your sequence is shorter than subject: 124 - 353

Fln protein: FERSAEVYDPSTGVWNRVENMWSIGGCPRSCVAEFGNLYFFHRQQVMSYNSKENVWEVVASLPGDMNIVTCATVWCDKIFVSGSACSGGDQVCYMLDKSWAWAPIERSHEFEGFAQSAITVEM*

Protein Length: 125

Fln nts: TTCGAGAGGAGTGCGGAAGTATACGATCCCAGTACAGGCGTTTGGAACAGGGTGGAGAATATGTGGAGTATTGGGGGATGCCCCAGGTCGTGTGTTGCTGAGTTTGGGAATTTGTATTTCTTCCATAGGCAACAAGTGATGTCTTATAATAGTAAAGAGAATGTTTGGGAAGTGGTGGCATCTCTTCCTGGAGATATGAATATTGTTACTTGCGCAACAGTGTGGTGTGACAAGATATTTGTGAGCGGTTCTGCTTGCAGTGGTGGCGATCAGGTGTGTTACATGCTGGACAAATCTTGGGCGTGGGCTCCTATTGAGAGGTCACATGAGTTTGAGGGTTTTGCTCAGTCTGCAATAACTGTAGAGATGTGA___GCAGATTCTGGTGGGTCCACTTAATTTTGGGATTATAATAGTGCCG

Fln Alignment:

Contig4093___FERSAEVYDPSTGVWNRVENMWSIGGCPRSCVAEFGNLYFFHRQQVMSYNSKENVWEVVASLPGDM-NIVTCATVWCDKIFVSGSACSGGDQVCYMLDKSWAWAPIERSHEFEGFAQSAITVEM
B8LRS6_________________FERSAEVFDPSTGVWSRVENMWNIGGCPRSCVAALGHLYFFHNQHVMRYNGKENVWEVVASLPQCMDDVATCATVWHDKIFVSGSTYKSGEQVCYMFDNSGKWVHIERPHDFVGFVQSAITVEM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
292		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain