SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4085

Length: 842 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4085 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15417	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	putative endomembrane protein 70 [Arabidopsis thaliana] gb\|AAK96649.1\| T5E21.14/T5E21.14 [Arabidopsis thaliana] gb\|AAM16222.1\| At1g14670/T5E21.14 [Arabidopsis thaliana] gb\|AEE29200.1\| putative endomembrane protein 70 [Arabidopsis thaliana]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	phagocytic receptor 1b-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
81	50	50			1.0
82	50	50			1.0
461		54		45	1.0
530	90	10			0.90298
531	90	10			0.90298
533			90	10	0.90298
599	85	14			0.993533
600	85	14			0.993533
602			85	14	0.993533
605		16	83		0.994512
606	83	16			0.994512
608			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain