SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4075

Length: 1391 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4075

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7633	4/6
SustainPine v2.0	sp_v2.0_unigene69664	2/6

Source	Descriptions	Term	Type	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 11 [Arabidopsis thaliana] sp\|Q8L868.1\|E1311_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 11; AltName: Full=(1->3)-beta-glucan endohydrolase 11; Short=(1->3)-beta-glucanase 11; AltName: Full=Beta-1,3-endoglucanase 1	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQK4

Fln msg: Separated hits, possible frame ERROR between 869 and 985, your sequence is shorter than subject: 359 - 451

Fln protein: GGVFEEYYQSWAFTFTKCSIQKIHGSQNEANSRAGFEKGHGISLGNEVYAGNDTVLKQNLMGALKNIHSALVSLGLDNTVKVSTAHSFDVFVSSFPPSSCAFSDKSVTYMKQLLDFLSATHAPFLVNVYPYFAYKGDPSNVPLDYALFRPSNGVVDSKTNLHYDNLFYAQIDAAYSALAALGYGKVEVRVSETGWPSKGDDDEVGATPENAKTYNGNLLERLHKKEGTPLKPNVSVQAFIFALFNENLKTGPTSERNYGLFKPDGTETYDLGLKGLKRIVSSLPPPPTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKGMRSLVFISFYLQILALSSFISVLILEH*

Protein Length: 360

Fln nts: ATGGGGGAGTGTTCGAAGAATACTATCAATCTTGGGCCTTTACCTTCACAAAGTGCTCAATTCAGAAAATCCATGGAAGCCAAAACGAGGCCAACAGCAGAGCTGGATTTGAGAAGGGGCATGGGATTTCGCTGGGCAACGAGGTCTACGCGGGCAACGATACGGTACTGAAACAGAATCTGATGGGTGCTCTGAAGAACATACACTCGGCCCTGGTGAGCCTCGGCCTCGACAACACCGTTAAGGTCTCCACGGCGCACTCTTTCGACGTCTTCGTATCCTCCTTCCCGCCTTCCAGTTGCGCCTTCAGCGACAAATCCGTGACTTACATGAAGCAGCTCTTGGACTTTCTTTCCGCAACGCACGCGCCTTTTCTGGTCAATGTGTACCCCTATTTTGCCTACAAGGGCGACCCGAGCAACGTCCCTCTGGACTACGCTCTCTTCCGGCCCAGCAATGGCGTGGTCGATTCCAAGACCAATTTGCACTACGACAACCTGTTCTACGCCCAGATCGACGCTGCGTACTCGGCGCTCGCCGCTCTGGGCTACGGTAAGGTCGAGGTCAGGGTCTCGGAGACAGGGTGGCCCTCCAAGGGGGACGATGATGAGGTCGGTGCCACGCCCGAGAATGCAAAGACTTACAATGGGAACCTTCTGGAGAGGCTCCACAAGAAGGAGGGTACTCCCCTGAAGCCCAATGTGAGCGTGCAGGCCTTCATTTTTGCGCTCTTTAATGAGAATTTGAAGACCGGGCCTACATCCGAGAGAAATTATGGGCTCTTTAAACCAGACGGAACCGAGACGTATGACCTTGGCTTGAAAGGATTGAAGCGAATAGTGTCCTCTCTGCCTCCGCCCCCCACTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCTAAGGGAATGCGTTCACTGGTCTTCATTTCCTTCTACCTCCAGATTTTAGCTCTCTCTTCTTTTATCAGTGTTCTGATTTTGGAACATTAGCAAACAAAATTGATTATTCTTTCACTGGAATATCTACTTATATATTAGAGTAGAAAACAACCACAATCTTCTCCTCTCAACTCGGTGCCAGATTGAGTCTAATCCAATCAGGAAGTTCCTGCTTGTATTAAAACAAGATTACGTGAGTCTTGCTATACAACGCACATGTTACGGACAAATACTCTTGAGAATTAATCTTTGTAATGCTGGCCTGGGTCTGTATATGAATCTGGAAGTTCATGGTGCTCTTTCTTATTGTGTCTTGCTATCATCTTAGAGCATTAATCAAGTTTGTAGGCATACTCTTGAATTAA

Fln Alignment:

Contig4075___GISLGNEVYAGNDTVLKQNLMGALKNIHSALVSLGLDNTVKVSTAHXXXXXXXXXXXXXXXXXXKSVTYMKQLLDFLSATHAPFLVNVYPYFAYKGDPSNVPLDYALFRPSNGVVDSKTNLHYDNLFYAQIDXXXXXXXXXXXXKVEVRVSETGWPSKGDDDEVGATPENAKTYNGNLLERLHKKEGTPLKPNVSVQAFIFALFNENLKTGPTSERNYGLFKPDGTETYDLGLKGLKRIVSSLPPPPTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKGMRSLVFISFYLQILALSSFISVLILEH
B8LQK4_________________GVLVGNEVYSGNDTVLKENLMGALKNIHSALVSLGLDKSVKVSTAHSFEVFGSSFPPSSCVFSDKTVAYMKQLLDFLSATHATFLVNVYPYFAYKGDTTNVPLNYALFRPSDGVVDSKNNLHYDNLFYAQIDAAYAALAALGYGKVEVRVSETGWPSKGDDDEVGATPDNAKTYNGNLLERLRKKEGTPLQPNVSVQAFIFALFNENMKPGPTSERNYGLFKPDGTETYDLGLKGLKRIVSSLSPPPSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKGMHSLVFVSFYLQVLALSSLVSVVILEH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
899		80		20	0.995493
978	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain