SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4060

Length: 376 nt

UniGene Fasta

>biog2_v2.0_unigene4060
GTTGCAAGGTTTGCTGGAAGATATGTTTGACTCTGCAGTTGAAGTTGACACTGCAAACTTGAAGTTACAAATAAATTTGCATATAACACGTGAGAAATCACCTGCGAGTTTAGGTGGAGTTGAGCTCTTGTCAGTATTAACTGCAATGGATGTAGCAGGGATATTGGATGTTGCGTTTGCAAGGTTGGCAGACTCTTTGATCAAATCTGTCATTATTCCTGTGACACATACTTCAGCAATTCATATTGTTTCAGAAGAATCAGTCAAAAATAAGCCGGTTCTTAGCTGGGCATTATTGTCTGATATTCAGAGCGAAGGTGTAGCTCCTGGAGCTTTATATCCAAAGCTTCTTCAAGTTTTGAAATTTGTATATCAA

Ace file of the UniGene biog2_v2.0_unigene4060

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5308	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	centromere/kinetochore protein ZW10 [Arabidopsis thaliana] sp\|O48626.1\|ZW10_ARATH RecName: Full=Centromere/kinetochore protein zw10 homolog gb\|AAB88246.1\| AtZW10 [Arabidopsis thaliana] gb\|AAL47437.1\| At2g32900/T21L14.16 [Arabidopsis thaliana] gb\|AEC08759.	-	-	5.0e-14	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	centromere kinetochore protein zw10 homolog	-	-	0.0	55%

Source	GOs	Term	Type	Identity
Blast2go	mitosis	GO:0007067	Biological Process	55%
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	55%
Blast2go	nucleus	GO:0005634	Cellular Component	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQW3

Fln msg: Distance to subject end: 443 aas, your sequence is shorter than subject: 125 - 767

Fln protein: LQGLLEDMFDSAVEVDTANLKLQINLHITREKSPASLGGVELLSVLTAMDVAGILDVAFARLADSLIKSVIIPVTHTSAIHIVSEESVKNKPVLSWALLSDIQSEGVAPGALYPKLLQVLKFVYQ

Protein Length: 126

Fln nts: GTTGCAAGGTTTGCTGGAAGATATGTTTGACTCTGCAGTTGAAGTTGACACTGCAAACTTGAAGTTACAAATAAATTTGCATATAACACGTGAGAAATCACCTGCGAGTTTAGGTGGAGTTGAGCTCTTGTCAGTATTAACTGCAATGGATGTAGCAGGGATATTGGATGTTGCGTTTGCAAGGTTGGCAGACTCTTTGATCAAATCTGTCATTATTCCTGTGACACATACTTCAGCAATTCATATTGTTTCAGAAGAATCAGTCAAAAATAAGCCGGTTCTTAGCTGGGCATTATTGTCTGATATTCAGAGCGAAGGTGTAGCTCCTGGAGCTTTATATCCAAAGCTTCTTCAAGTTTTGAAATTTGTATATCAA

Fln Alignment:

Contig4060___LQGLLEDMFDSAVEVDTANLKLQINLHITREKSPASLGGVELLSVLTAMDVAGILDVAFARLADSLIKSVIIPVTHTSAIHIVSEESVKNKPVLSWALLSDIQSEGVAPGALYPKLLQVLKFVYQ
C0PQW3_________________LQDLLEYMFDTAIQVDNAHSKLYINLHITCEKLPVSLGGVELSSVLTAMDIAGILDAAFARLADSIIKSVIIPVTHTSAIHIVSEELVKNKPVLSWALLSDTQSEGVAPGTLYPKLLQVLKLVYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain