SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4054

Length: 319 nt

UniGene Fasta

>biog2_v2.0_unigene4054
CCTTCTTTCATTCATGGTTATATGCCCATGCTTTCGTGTCAAAAAGAAAGAAGAAAAACGCCCTTGTCTTGTGCCTCCTCCAATGGACTCAATTTCATCTTTTGAGGTAAGTTCCACAAGTGAATTGACAACGGCTAGCCCACATCGGTTTTCTCTTTCTCCACAGCCAAGCAATGTTGGAGCTATTATGTTTTCCCTAGCTCAGATTAGTAAAGCAACTCGCAACTTTTCACCATCATTAAAGATTGGTCAAGGAGGATTTGGAACAGTTTATAAAGGTCAGCTGGATAATGGCCAAGTTGTTGCTATTAAACGAGCT

Ace file of the UniGene biog2_v2.0_unigene4054

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1736	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	calmodulin-binding receptor-like cytoplasmic kinase 3 [Arabidopsis thaliana] gb\|AAK32926.1\|AF367339_1 At2g11520/F14P14.15 [Arabidopsis thaliana] gb\|AAD28055.2\| putative protein kinase [Arabidopsis thaliana] gb\|AAM16251.1\| At2g11520/F14P14.15 [Arabidopsis	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: Distance to subject end: 333 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 102 - 458

Fln protein: MVICPCFRVKKKEEKRPCLVPPPMDSISSFEVSSTSELTTASPHRFSLSPQPSNVGAIMFSLAQISKATRNFSPSLKIGQGGFGTVYKGQLDNGQVVAIKRA

Protein Length: 103

Fln nts: CCTTCTTTCATTC_-_ATGGTTATATGCCCATGCTTTCGTGTCAAAAAGAAAGAAGAAAAACGCCCTTGTCTTGTGCCTCCTCCAATGGACTCAATTTCATCTTTTGAGGTAAGTTCCACAAGTGAATTGACAACGGCTAGCCCACATCGGTTTTCTCTTTCTCCACAGCCAAGCAATGTTGGAGCTATTATGTTTTCCCTAGCTCAGATTAGTAAAGCAACTCGCAACTTTTCACCATCATTAAAGATTGGTCAAGGAGGATTTGGAACAGTTTATAAAGGTCAGCTGGATAATGGCCAAGTTGTTGCTATTAAACGAGCT

Fln Alignment:

Contig4054___PCFRVKKKEEK--RPCL-VPPPMDXXXXXXXXXXXELTTASPHRFSLSPQPS-------------------NVGAIMFSLAQISKATRNFSPSLKIGQGGFGTVYKGQLDN-GQVVAIKR
D5AAA3_________________PCFRSSKKKKKPSKPSKPLKPSKSLKPSKDDSKTGQSAASSTHQPSKDPPDSLKSKPSFDSRKEVSRDGSQHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain