SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4027

Length: 1249 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4027

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16100	37/38

Source	Descriptions	Term	Type	Identity
AutoFact	Succinate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SLS5_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	succinate dehydrogenase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Fumarate reductase, C-terminal	IPR012285	-	-
Sma3	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	IPR004489	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP54

Fln msg: your sequence is longer than subject: 309 - 275

Fln protein: MGDLILVTLRFLGVGSGGCWKGPERSINPYIHTMSAVSRVFRRLPSGGEGVGSVLARSFSSTATSAAEPKASKPKTFSIYRWDPEHAEKPRLENYTINTKECGPMVLDALIKIKNETDPSVTFRRSCREGICGSCAMNINGCNGLACLTKIDTASDSATTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPPADGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPEKYLGPAALLHANRWISDSRDEYTEERVDAVTDEFKLYRCHTIMNCTRACPKGLNPAKEIANIKKIGMASVI*

Protein Length: 310

Fln nts: _-_ATGGGGGATTTAATTTTGGTTACTCTGCGATTCTTAGGAGTCGGCTCTGGAGGCTGTTGGAAGGGACCTGAGCGATCGATCAATCCATACATCCATACAATGTCAGCAGTCTCGCGTGTGTTTCGTCGGCTCCCCAGTGGAGGAGAAGGCGTGGGTTCGGTTCTCGCCCGCTCCTTCTCCAGCACGGCCACGTCCGCAGCAGAGCCGAAGGCATCGAAGCCGAAGACCTTTTCGATATACCGCTGGGATCCGGAGCACGCAGAGAAGCCCCGGCTGGAGAACTACACGATAAATACGAAGGAGTGCGGGCCCATGGTGCTGGACGCTCTGATCAAGATCAAGAACGAGACGGACCCCTCGGTCACCTTCAGGCGCTCCTGCAGGGAGGGCATCTGTGGATCCTGCGCCATGAACATTAACGGCTGCAACGGCCTCGCCTGCCTCACCAAGATCGACACCGCCTCTGATTCAGCCACCACCATCACGCCCTTGCCGCACATGTTCGTTATCAAAGACCTGGTTGTGGACATGACCAACTTCTATAATCAGTACAAGAGCATCGAACCCTGGCTCAAGAGGAAGACGCCCCCTGCGGATGGGAAGGAGATTCTCCAGAGCAAGAAGGATCGGGCCAAGCTCGACGGCATGTACGAGTGTATTCTCTGCGCCTGTTGCAGCACTTCCTGCCCTAGCTACTGGTGGAATCCCGAGAAGTATCTCGGCCCCGCGGCTCTCCTACACGCTAACAGGTGGATAAGTGACAGCCGTGATGAGTACACAGAGGAGAGGGTAGATGCAGTGACTGATGAGTTCAAATTATACCGTTGCCATACTATTATGAACTGCACTCGGGCTTGTCCTAAGGGTTTAAACCCTGCAAAGGAGATAGCTAATATAAAGAAGATTGGAATGGCTAGTGTTATTTAG___ATTACTGTTGTTTGGTTCTCTGATTGACAAGAAGTTATCGGGATGTCTGCATAAAGATTTTGTTTTAGTGGAATGCATGCTATTATGCTTTTCCCAGATATTTTTTCTGGTATATGTTTTTGAAAATCCAGTTACACTATGATCTGAGTAGAATGCTAGCACACTTCGGTTACCCTATGACCTGAATGAAATGCTGCATAGTCCAACAATAAACTTGCAATGTTACAGCCCAAAATAACGGTACTGAACAGTGATACTACTGCTACAAGAAGAGACATCTTGTACTGAATGTTGAATTACATACTCATTCTCATATGATTTA

Fln Alignment:

Contig4027___MSAVSRVFRRLPSGGEGVGSVLXXXXXXXXXXXX-EPKASKPKTFSIYRWDPEHAEKPRLENYTINTKECGPMVLDALIKIKNETDPSVTFRRSCREGICGSCAMNINGCNGLACLTKIDTASDSATTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPPADGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPEKYLGPAALLHANRWISDSRDEYTEERVDAVTDEFKLYRCHTIMNCTRACPKGLNPAKEIANIKKIGMASVI
B8LP54_________________MSTVSRVFRRLPSG-EGAGSVLARAFSSSTASSAVEPKASKPKTFSIYRWNPDHTEKPRLENYTINTKECGPMVLDALIKIKSETDPSLTFRRSCREGICGSCAMNINGCNGLACLTKIEVASDSATTITPLPHMFVVKDLVVDMTNFYNQYKSIEPWLKRKTPPQDGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPEKYLGPAALLHANRWISDSRDEYTEERLDAVTDEFKLYRCHTIMNCTRACPKGLNPAKEIAHIKKIGMARAI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
995	75		25		0.996473
1021		75		25	0.996473
1024	75			25	0.996473
1030		25		75	0.996473
1095	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain