SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4017

Length: 994 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4017 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6313	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z9_SOYBN	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 58 aas, your sequence is shorter than subject: 331 - 1073

Fln protein: P**HLACCALFETVKDLRGAGSVIRKLLSIDWYRNHIIENDNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGGMVQAKFGLAQTAVRQLEIYTTAVLLAALHPPDPPRSMNWRGVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSEIGHLRAIPWIFAWTQTRFVLPAWLGVGASGSSSLCKRIQRRITSHVQRMAIFQCTIDLIEMVLAKSDLSIAKHYDEVLVSPSRQKLGEELREAFCMTEKYVLLVSGHEKTSE

Protein Length: 332

Fln nts: CCCTGATAACACCTTGCGTGTTGTGCCCTATTTGAGACTGTCAAAGATTTGAGAGGTGCTGGATCAGTCATTCGGAAGTTATTATCAATAGATTGGTATCGAAACCATATTATTGAAAATGATAATGGACACCAGGAGGTTATGGTTGGTTATTCTGATTCAGGAAAAGATGCAGGGCGTTTCACTGCTGCATGGGAATTATATAAAGCACAGGAAGATGTTGTAGCTGCTTGTAAAGAATTTGGCATTAAAGTTACCCTATTCCATGGCCGTGGAGGAAGTATTGGGCGTGGTGGTGGACCTACATATCTTGCCATTCAATCTCAACCGCCTGGTTCTGTCATGGGAACTCTCCGATCGACAGAGCAGGGAGGAATGGTCCAGGCAAAGTTTGGCTTGGCACAAACAGCAGTGCGACAACTAGAAATCTACACAACTGCTGTTTTGCTTGCAGCTTTACATCCCCCAGATCCACCTCGTAGTATGAATTGGCGAGGGGTAATGGAAAAGATATCAGAAATCAGTCGGCAATATTATAGAAGCACTGTTTATGAAAATGAACAGTTTTTAGAGTACTTCCGTGAAGCCACTCCTGAAGCAGAGCTTGGTAATCTAAATATCGGAAGCCGTCCAACAAGGAGGAAAAAGTCTTCTGAGATTGGGCATCTCCGTGCAATTCCTTGGATATTTGCATGGACACAAACCAGATTTGTTTTACCTGCATGGCTTGGTGTTGGAGCAtCCGGGTCAAGCAGCCTGTGCAAAAGGATACAAAGAAGAATTACAAGCCATGTACAGAGAATGGCCATTTTTCAATGCACAATTGATTTAATTGAAATGGTACTTGCAAAGTCAGATTTATCCATTGCTAAGCACTATGATGAAGTTTTGGTGTCTCCTAGTAGACAGAAGTTAGGTGAAGAGTTGCGAGAAGCCTTTTGCATGACAGAGAAGTATGTGTTGCTCGTTAGTGGTCACGAAAAAACTTCGGAAA

Fln Alignment:

Contig4017___LFETVKDLRGAGSVIRKLLSIDWYRNHIIENDNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEFGIKVTLFHXXXXXXXXXXGPTYLAIQSQPPGSVMGTLRSTEQGGMVQAKFGLAQTAVRQLEIYTTAVLLAALHPPDPPRSMNWRGVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSEIGHLRAIPWIFAWTQTRFVLPAWLGVGASGSSSLCKRIQRRITSHVQRMAIFQCTIDLIEMVLAKSDLSIAKHYDEVLVSPSRQKLGEELREAFCMTEKYVLLVSGHEKTSE
C0PQ37_________________LFETVKDLRGAGSVIRKLLSIDWYRNHIIENDNGHQEVMVGYSDSGKDSGRFTAAWELYKAQEDVVAACKEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSLMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSANWREVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDISIAKHYDEVLVSPCRQKLGGELREAFCMTEKYVLLVSGHEKLTE

SNPs (tot: 7)

Position	A %	C %	T %	Probability
137	66	33		0.997452
138	66	33		0.997452
139		33	66	0.997452
140	33	66		0.997452
510		20	80	0.995493
543		66	33	0.997452
623		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain