SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3981

Length: 943 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3981

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16437	29/30

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L15-1 n=8 Tax=Embryophyta RepID=RL15A_PICMA	-	-	86%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15e	IPR000439	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
12			75	25	0.996473
136	83		16		0.994512
203	16	83			0.994512
259	80		20		0.995493
269	60	40			1.0
280		20		80	0.995493
291	16		83		0.994512
293	83		16		0.994512
294			16	83	0.994512
295			16	83	0.994512
298	14			85	0.993533
300	85		14		0.993533
301			14	85	0.993533
304		14		85	0.993533
679	25		75		0.996473
690	83		16		0.994512
717		80		20	0.995493
725	80		20		0.995493
772	10			90	0.90298
776			10	90	0.90298
800	20		80		0.999996
845			22	77	0.999999
855		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain