SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3979

Length: 284 nt

UniGene Fasta

>biog2_v2.0_unigene3979
CCAGAGTCGGACTCAAAGTTGTTGAATCAGTCACAGCCAAGGAATTTCATATTTCCTTGGGCTGTTCCGCAGCAGCATGGCCCCTGCAAACGCTTGGCTCACTTGGGAGCAGAAAAGCAAGCAGAATTTGCAACACTATTCCAAGGCTTTAGCGCCCAGCGGGATACCAGATGATAAAACGAACAATCGATTTGGGGAGGGTGCTATATCCACCCAAAATACTCAATCTGTAGTCAAAGCTTCTCAGGAGAGCCAGAGACCGCCGGCACCTGTTGCTGCCTACT

Ace file of the UniGene biog2_v2.0_unigene3979

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22096	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-responsive protein IAA7 n=1 Tax=Picea abies RepID=B2KZF8_PICAB	-	-	74%
FL-Next	tr=Auxin-responsive protein IAA7; Picea abies (Norway spruce) (Picea excelsa).	-	-	66%
Blast2go	phytochrome-associated protein 1	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidate phosphatase.	EC:3.1.3.4	-	0.0	59%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	59%
Blast2go	Glycerophospholipid metabolism	00564	59%
Blast2go	Ether lipid metabolism	00565	59%
Blast2go	Sphingolipid metabolism	00600	59%
Blast2go	Metabolic pathways	01100	59%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	59%
Blast2go	response to salt stress	GO:0009651	Biological Process	59%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	59%
Blast2go	removal of superoxide radicals	GO:0019430	Biological Process	59%
Blast2go	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	59%
Blast2go	sucrose mediated signaling	GO:0009745	Biological Process	59%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	59%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	59%
Blast2go	protein binding	GO:0005515	Molecular Function	59%
Blast2go	phosphatidate phosphatase activity	GO:0008195	Molecular Function	59%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	59%
Blast2go	plasma membrane	GO:0005886	Cellular Component	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	AUX/IAA protein	IPR003311	-	0.0	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B2KZF8

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 69 - 256

Fln protein: MAPANAWLTWEQKSKQNLQHYSKALAPSGIPDDKTNNRFGEGAISTQNTQSVVKASQESQRPPAPVAAY

Protein Length: 70

Fln nts: CCAGAGTCGGACTCAAAGTTGTTGAATCAGTCACAGCCAAGGAATTTCATATTTCCTTGGGCTGTTCCGCAGCAGC_-_ATGGCCCCTGCAAACGCTTGGCTCACTTGGGAGCAGAAAAGCAAGCAGAATTTGCAACACTATTCCAAGGCTTTAGCGCCCAGCGGGATACCAGATGATAAAACGAACAATCGATTTGGGGAGGGTGCTATATCCACCCAAAATACTCAATCTGTAGTCAAAGCTTCTCAGGAGAGCCAGAGACCGCCGGCACCTGTTGCTGCCTACT

Fln Alignment:

Contig3979___ANAW-LTWEQKSKQNLQHYSKALAPSGIPDDKTNNRFGEGAISTQNTQSVVKASQESQRPPAPVAA
B2KZF8_________________SNTWQINWEQKNKQNFQQYPQAIGPSEIPDEKTNNRFGEAAKSTANTQSVVKDSHESQRLPSAVAA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
81		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain