SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3976

Length: 1387 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3976

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21562	46/47

Source	Descriptions	Term	Type	Identity
AutoFact	putative syntaxin 71 (SYP71) [Oryza sativa Japonica Group]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	syntaxin-71	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to membrane	GO:0006612	Biological Process	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Histone chaperone, ASF1-like	IPR006818	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC68

Fln msg:

Fln protein: MSVIDILTRVDAICNKYEKYDIDKQKENQISGNDAFVRLYTVVEADIEAAKQKADDAAKEKNRAVVATLNAEIRRTKARLHEEIPKLQKLAQKKVKGLSKEDIVTRNDLVSALADKIDSIPDGTNAGTGRTAAWKTSTTRMEIKIDSSSPGGMNTEFYEHTEESKQFRQEFEMRRAKQDQGLDMIAEGLDTLKNMAHDINEELDRQVPLIDEIDTKVDKATSDLKNTNVRLKDTVTKLRSSRNFCIDIILLCIILGIAAYLYNVLKK*

Protein Length: 269

Fln nts: ACATGGGTCCGACAATGGGTTGTACCTTTAGAGTCACTCTGCAATCTTTCACTCAAGGTGTTTTAATCAATCTTTCAATAAGTTTGTTTAATCAATCCTACTGCAAGAGATTTGAAATCAAGGCTCTCAGCTGGAGTCCTTGTTTTCTTCTCGGGTAAGGAATTCCGAGGGAAAACGCAGATCCGCAAGAGTAGGCTTCGAGCACATCAGATCTGATCACTGCGAAG_-_ATGAGTGTCATCGACATTCTTACGCGGGTGGACGCCATCTGCAACAAGTATGAAAAATACGACATCGACAAACAGAAGGAGAATCAGATCTCCGGAAATGACGCCTTCGTTAGGCTTTATACCGTTGTCGAGGCCGACATCGAGGCCGCAAAGCAGAAAGCTGACGATGCCGCGAAGGAGAAGAACAGGGCAGTGGTCGCGACTCTGAATGCTGAAATTCGACGCACCAAGGCCAGATTGCATGAAGAGATCCCCAAGTTGCAGAAATTGGCTCAGAAAAAGGTTAAAGGCCTTTCAAAAGAAGATATTGTTACTCGGAATGATCTAGTGTCAGCTTTAGCAGACAAGATTGATTCAATTCCAGATGGAACAAATGCAGGCACTGGGCGAACTGCAGCATGGAAGACATCAACTACACGTATGGAAATCAAAATTGACTCATCATCTCCAGGTGGGATGAATACTGAGTTTTATGAGCACACTGAGGAATCTAAGCAGTTCAGACAGGAGTTTGAAATGCGGAGAGCGAAACAGGATCAAGGATTAGACATGATTGCAGAGGGCCTTGATACATTGAAGAACATGGCTCACGACATAAATGAGGAACTGGATAGACAAGTGCCTTTGATTGATGAGATTGACACAAAGGTGGATAAGGCAACATCAGACCTTAAGAACACAAATGTGAGATTGAAAGACACAGTTACTAAGTTGCGGTCCAGTCGCAATTTCTGTATTGATATCATTCTGCTTTGCATAATACTGGGGATTGCTGCTTACTTATACAATGTCTTGAAGAAATAG___ATGAAGATTTCAAAACCAGAAGTTGCCTCAGCGGGAAGCAATGTGACTTATAAGTTGGTTTTTCCTGGCAAGTGGCAGCTCTGTTGCTGCTGGCAAATCCTGCAGAGAACTGATTGCCTTCTTCTCTGCAGTATTGCACTATTCACAATTTCACAAACATGTTTGTGGTATTATTCACAATGATGGCATTTGTTTAATGTGTTACCTCTTTTAGTCTGATGATTTTTATTGAATGATCAGTACTATATAGTATAGATTCTTGTCTCATTGTAAAAATGGCATTGAATACATACATATTCATTTCGAGAAAGTTTCTGTGCTCTTTTGTGGCCTATCAAAGCATTCTAATTCATTGT

Fln Alignment:

Contig3976___MSVIDILTRVDAICNKYEKYDIDKQKENQISGNDAFVRLYTVVXXXXXXXXXXXXXXXXXXNRAVVATLNAEIRRTKARLHEEIPKLQKLAQKKVKGLSKEDIVTRNDLVSALADKIDSIPDGTNAGTGRTAAWKTSTTRMEIKIDSSSPGGMNTEFYEHTEESKQFRQEFEMRRAKQDQGLDMIAEGLDTLKNMAHDINEELDRQVPLIDEIDTKVDKATSDLKNTNVRLKDTVTKLRSSRNFXXXXXXXXXXXXXXXXXXNVLKK
D5AC68_________________MSVIDILTRVDAICNKYDKYDIEKHRENQISGSDAFVRLYTVVESDIEAAKQKSDDAAKEKNRAVVATLNAEIRRTKARLHEEIPKLQKLAQKKVKGVSKEDIVARNDLVSALADKIDSIPDGTNAGTVRTAAWKTSATRMEIKIDSSSPGGMNTEFYEHTEESKQFRQDFEMRRAKQDQGLDMISEGLDTLKNMAQDINEELDRQVPLIDEIDTKVDKATSDLKNTNVRLKDTVNKLRSSRNFCIDIILLCIILGIAAYLYNVLKK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1286	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain