SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3964

Length: 434 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3964
TAATGCAAACTATATGCCAACAACGAAATTTCCAAGCAGTATTTATGTGAAGGAAATTTCTTTCCGGTCGAAGGATTCACGGCATGTCAATCAGGTTGTTCAGATGATCAAATCCCACAAACGCTCCGTAGCAATGAAAGAATCTGAGAAAGCAGAAAGAGCAACATTAGTGACTCAAGAGAAGCTTCAGCTCTCTAAGACAAAGCCAATCAGGCTGTCGGATCTGTGGATTCGGCCTGCATTTGGGGGGAGAGGCAGAAAGATGACTGGAACCCTAGAGAGTCATTACAATGGCTTTCGTTATTCAACGATGAGAGCGGAGGAGAGAGTTGATATCATGTTTCAAAACATCAAGCATGCATTCTTTCAGCCAGCAGAAAAAGAATGATTACTCTGCTGCATTTTCACCTACACAATCATATTATGGTAGGCAC

Ace file of the UniGene biog2_v2.0_unigene3964 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene696	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	fact complex subunit	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	83%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	83%
Blast2go	DNA repair	GO:0006281	Biological Process	83%
Blast2go	binding	GO:0005488	Molecular Function	83%
Blast2go	chromosome	GO:0005694	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Domain of unknown function DUF1747	IPR013719	-	-
Sma3	FACT complex subunit Spt16p/Cdc68p	IPR013953	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABN5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 315 aas, your sequence is shorter than subject: 125 - 372

Fln protein: MPTTKFPSSIYVKEISFRSKDSRHVNQVVQMIKSHKRSVAMKESEKAERATLVTQEKLQLSKTKPIRLSDLWIRPAFGGRGRKMTGTLESHYNGFRYSTMRAEERVDIMFQNIKHAFFQPAEKE*

Protein Length: 126

Fln nts: TAATGCAAACTAT_-_ATGCCAACAACGAAATTTCCAAGCAGTATTTATGTGAAGGAAATTTCTTTCCGGTCGAAGGATTCACGGCATGTCAATCAGGTTGTTCAGATGATCAAATCCCACAAACGCTCCGTAGCAATGAAAGAATCTGAGAAAGCAGAAAGAGCAACATTAGTGACTCAAGAGAAGCTTCAGCTCTCTAAGACAAAGCCAATCAGGCTGTCGGATCTGTGGATTCGGCCTGCATTTGGGGGGAGAGGCAGAAAGATGACTGGAACCCTAGAGAGTCATTACAATGGCTTTCGTTATTCAACGATGAGAGCGGAGGAGAGAGTTGATATCATGTTTCAAAACATCAAGCATGCATTCTTTCAGCCAGCAGAAAAAGAATGATTACTCTGCTGCATTTTCACCTACACAATCATATTATGGTAGGCAC

Fln Alignment:

Contig3964___MTGTLESHYNGFRYSTMRAEERVDIMFQNIKHAFFQPAEKE
D5ABN5_________________MTGTLESHYNGFRYSTMRAEERVDVMYQNIKHAFFQPAEKE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
41	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain