SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3962

Length: 370 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3962
GAGGTGCTTGCAATGCTGTGTTTTCTCTTCCAGTGGATTTGGCAGACAAGGGGGTTGTGACTCACAGCAGTGGTAATCATGCAGCAGCATTGGCTTTGGCTGCAAAACTGCGTGGCATTCCAGCATATATTGTAATCCCCCAAAATGCTCCAATTTGTAAAGTAGACAATGTTAAACGATATGGTGGACAGGTCATTTGGTGTGAACCGACAATGCAATCAAGAGAGAGTGTATCTGCTAAAGTACAGGAAGAAACTGGTGCAGTATTGATTCACCCATTTAATGATGGCCGTATCATAAGTGGGCAAGGTACAATTTCTCTGGAACTCTTAGAGAAAGTACCGCAGCTTGATGCGATTGTTGTTCCAAT

Ace file of the UniGene biog2_v2.0_unigene3962 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1288	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Serine racemase, putative n=1 Tax=Ricinus communis RepID=B9RC97_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	serine racemase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Threonine ammonia-lyase.	EC:4.3.1.19	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	84%
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	serine family amino acid metabolic process	GO:0009069	Biological Process	84%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	84%
Blast2go	serine racemase activity	GO:0030378	Molecular Function	84%
Blast2go	L-threonine ammonia-lyase activity	GO:0004794	Molecular Function	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	0.0	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZE1

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 122 - 342

Fln protein: GACNAVFSLPVDLADKGVVTHSSGNHAAALALAAKLRGIPAYIVIPQNAPICKVDNVKRYGGQVIWCEPTMQSRESVSAKVQEETGAVLIHPFNDGRIISGQGTISLELLEKVPQLDAIVVP

Protein Length: 123

Fln nts: GAGGTGCTTGCAATGCTGTGTTTTCTCTTCCAGTGGATTTGGCAGACAAGGGGGTTGTGACTCACAGCAGTGGTAATCATGCAGCAGCATTGGCTTTGGCTGCAAAACTGCGTGGCATTCCAGCATATATTGTAATCCCCCAAAATGCTCCAATTTGTAAAGTAGACAATGTTAAACGATATGGTGGACAGGTCATTTGGTGTGAACCGACAATGCAATCAAGAGAGAGTGTATCTGCTAAAGTACAGGAAGAAACTGGTGCAGTATTGATTCACCCATTTAATGATGGCCGTATCATAAGTGGGCAAGGTACAATTTCTCTGGAACTCTTAGAGAAAGTACCGCAGCTTGATGCGATTGTTGTTCCAAT

Fln Alignment:

Contig3962___GACNAVFSLPVDLADKGVVTHSSGNHXXXXXXXAKLRGIPAYIVIPQNAPICKVDNVKRYGGQVIWCEPTMQSRESVSAKVQEETGAVLIHPFNDGRIISGQGTISLELLEKVPQLDAIVVP
A9NZE1_________________GACNAVFSLPVDLADKGVVTHSSGNHAAALALAAKLRGIPAYIVIPKNAPICKVENVKRYGGQVIWCEPTMQERESVSAKVQEETGAVLIHPFNDGRIISGQGTISLELLEQVAQLDAIVVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain