SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3949

Length: 964 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3949

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7445	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	transcription factor bhlh113-like	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	0.0	72%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P269

Fln msg: your sequence is shorter than subject: 265 - 355

Fln protein: SDGNAGKFLFRPDAFPCGPFTKLLDPTNTLPPDSLDLELEGFPASSKVSIPLMGLPGPLKAPATFPSSNILTFHSNMNKLDIPYTSPSPKPVLVQQQKSGGSPSSSPSTSSSNNNLQKNAVDEGGECTTEQKRSSDQAGLSNAAFKKPRTEPSAGPPMKVRKEKLGERITALQQLVSPFGKTDTASVLFEAMGYIKFLQDQVQVLSSPYLKGVPPSQKDGRGDQAKYDLRSRGLCLVPVSCTLHVANNNGADFWTSGIGSGSKF*

Protein Length: 266

Fln nts: ACAGCGACGGCAATGCAGGGAAGTTCTTGTTTCGACCTGATGCGTTTCCTTGCGGCCCTTTCACTAAGCTCCTTGATCCTACCAACACCTTGCCCCCTGATTCGCTGGACCTCGAGCTGGAAGGATTTCCAGCCTCCAGCAAAGTATCAATTCCGCTTATGGGGCTTCCTGGCCCGCTTAAGGCTCCCGCTACTTTTCCGTCATCAAATATCTTAACATTCCACAGTAATATGAACAAACTGGACATTCCTTATACTAGCCCAAGCCCTAAACCTGTTCTCGTCCAGCAGCAGAAGTCCGGAGGCAGCCCCTCCAGTTCTCCTTCCACATCTTCGAGCAATAATAATTTGCAAAAGAATGCTGTTGATGAAGGTGGAGAGTGCACTACTGAACAGAAGAGAAGCAGCGATCAAGCCGGGCTTTCCAATGCGGCTTTCAAGAAACCTAGAACAGAACCTTCTGCGGGCCCTCCGATGAAGGTGCGCAAAGAGAAGTTAGGCGAACGCATTACGGCATTGCAGCAGCTCGTCTCGCCGTTTGGAAAGACCGATACGGCATCCGTTCTTTTTGAAGCCATGGGATACATTAAATTCCTGCAAGATCAGGTTCAGGTATTGAGCTCACCTTATCTCAAAGGCGTTCCCCCCAGCCAGAAGGACGGGCGAGGAGATCAGGCGAAATACGACCTTAGGAGCAGAGGATTATGCCTAGTTCCTGTGTCGTGTACTCTCCATGTAGCCAACAACAATGGGGCAGATTTCTGGACATCTGGTATCGGAAGCGGTTCCAAGTTTTGA___ACATCTTGCAGGCCCCCTTTTTTGTTGTTTTTCTTTTTCAGTCTGTTCCTGCGTTTTTCAACGGAACAGTTGTCACCTTTACCACATAAATTCAAAGCTTTAATAGTAGAAAAGCAGAAAGATGAAGACGGGACGAAAGCAGTCCTGTCTTCGATGTCCCATTTAGA

Fln Alignment:

Contig3949___DGNAGKFLFRPDAFPCGPFTKLLDPTNTLPPDSLDLELEGFPASSKVSIPLMGLPGPLKAPATFPSSNILTFHSNMNKLDIPYTSPSPKPVLVQQQKXXXXXXXXXXXXXXNNNLQKNAVDEGGECTTEQKRSSDQAGLSNAAFKKPRTEPSAGPPMKVRKEKLGERITALQQLVSPFGKTDTASVLFEAMGYIKFLQDQVQVLSSPYLKGVPPSQKDGRGDQAKYDLRSRGLCLVPVSCTLHVANNNGADFWTSGIGSGSKF
A9P269_________________DGNAGKLLFRPETFPCGPFTRLLDPSNNLPPDSLELELEGFPSSRKVSIPPVQLPGPLKASATFQSSNVLTFHSNMNKLEMPYTNPSPKPVVVQQQKSGGSPSSSPSTSSSNNNLPKNTVDEGGECTTEQKRNSDQAGLSNTAFKKPRTEVSAGAPMKVRKEKLGERITALQQLVSPFGKTDTASVLLEAMGYIKFLQDQVQVLSSPYLKGIPSNQKDGRGDQAKYDLRSRGLCLVPVSCTLHVANNNGADFWTSGIGSGSKF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
159		33		66	0.997452
160	66		33		0.997452
162			66	33	0.997452
163		33	66		0.997452
164	33		66		0.997452
558	16		83		0.994512
649		83		16	0.994512
677	66		33		1.0
699		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain