SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3929

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3929
CGTTGTTGCTTCATGTTATCTTCGAGCAGCGCTGTTACATATGTGAAACAAGAACGCCGGCGAAAAAGCCAGGGAATTATACAGAACCCTGCAAAAAGACGCCGATTTTTCACGAATTGATCGTCCATTTTATTATCTTTTTGGCTGGACCTTCTCACTGATGTTGTAGTTCTCACTTTGCAATGGCGCTTTACTTGCTGTTCGAATTCGCTTCTGGATATGGGTTGTTTGAGGCACATGGAATAGATGAAATTGGGCAGAGCACAGAGGCTGTTCAGAGCTCCATTATCGATTTAAATCGATTTGGGAAGGTCGTGAAGCTGACTGCAATTCAGCCATTTAGTTCGGCAGCTGATGCATTGAACCAGTGCAATGCAGTCTCTGAAGGACTCATGACAGATGAGCTGAGGAATTTTCTAGAGCTAAACTTGCCAAAAGTTAAGGAGGGGAAGAAACCTAAATTCAGCTTGGGAGTGGCAGAACCAAAGCTAGGTTCTCAAA

Ace file of the UniGene biog2_v2.0_unigene3929 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9084	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	homolog of nucleolar protein NOP56 [Arabidopsis thaliana] gb\|AAF02835.1\|AC009894_6 nucleolar protein [Arabidopsis thaliana] gb\|AAG40838.1\|AF302492_1 NOP56-like protein [Arabidopsis thaliana] gb\|AAK62596.1\| At1g56110/T6H22_9 [Arabidopsis thaliana] gb\|AAM26	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	82%
Blast2go	nucleolar protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	89%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	IPR002687	-	-
Sma3	NOP5, N-terminal	IPR012974	-	-
Sma3	NOSIC	IPR012976	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6GST1

Fln msg: Distance to subject end: 452 aas, your sequence is shorter than subject: 106 - 558

Fln protein: MALYLLFEFASGYGLFEAHGIDEIGQSTEAVQSSIIDLNRFGKVVKLTAIQPFSSAADALNQCNAVSEGLMTDELRNFLELNLPKVKEGKKPKFSLGVAEPKLGSQ

Protein Length: 107

Fln nts: CGTTGTTGCTTCATGTTATCTTCGAGCAGCGCTGTTACATATGTGAAACAAGAACGCCGGCGAAAAAGCCAGGGAATTATACAGAACCCTGCAAAAAGACGCCGATTTTTCACGAATTGATCGTCCATTTTATTATCTTTTTGGCTGGACCTTCTCACTGATGTTGTAGTTCTCACTTTGCA_-_ATGGCGCTTTACTTGCTGTTCGAATTCGCTTCTGGATATGGGTTGTTTGAGGCACATGGAATAGATGAAATTGGGCAGAGCACAGAGGCTGTTCAGAGCTCCATTATCGATTTAAATCGATTTGGGAAGGTCGTGAAGCTGACTGCAATTCAGCCATTTAGTTCGGCAGCTGATGCATTGAACCAGTGCAATGCAGTCTCTGAAGGACTCATGACAGATGAGCTGAGGAATTTTCTAGAGCTAAACTTGCCAAAAGTTAAGGAGGGGAAGAAACCTAAATTCAGCTTGGGAGTGGCAGAACCAAAGCTAGGTTCTCAAA

Fln Alignment:

Contig3929___MALYLLFEFASGYGLFEAHGIDEIGQSTEAVQSSIIDLNRFGKVVKLTAIQPFSSAADALNQCNAVSEGLMTDELRNFLELNLPKVKEGKKPKFSLGVAEPKLGS
F6GST1_________________MALYLLYESASGYALFLAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALNQCNSVSEGLMTDELRSFLELNLPKVKEGKKPKFSLGTAEPKIGS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
370		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain