SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3914

Length: 896 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3914 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2295	7/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bZIP transcription factor [Malus x domestica]	-	-	3.0e-17	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	bzip transcription factor	-	-	0.0	55%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	55%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	55%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	55%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	55%
Blast2go	nucleus	GO:0005634	Cellular Component	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Basic leucine zipper	IPR011700	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
896		66	33		0.997452
897		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
354	367	TCT TCT TCT TCT TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain