SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3909

Length: 261 nt

UniGene Fasta

>biog2_v2.0_unigene3909
GAGGTTCTGGACATGCTGGACACGGTCCCAGGCAAAAAGAGGCAACTGTTGTAACTAAGGTTTACTGGGGTGATCCAAGGGAAAAATCTGTGATGCAATTGAAGATCTTAAGGTGGACTGCTTAGTCATGGGCAGCAGAGGCCTCGGACTCATCAAAAGAGTTTTACTTGGGAGCGTGAGCAATTATGTTGTGTCCAATGCATCCTGCCCAGTGACAGTAGTCAAAGGGACATATAAACCATAAAGGAATGGATGGATTTA

Ace file of the UniGene biog2_v2.0_unigene3909

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16261	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gb\|AAF26101.1\|AC012328_4 unknown protein [Arabidopsis thaliana] gb\|AEE73920.1\| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	universal stress protein a-like protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ10

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 81 - 164

Fln protein: RFWTCWTRSQAKRGNCCN*GLLG*SKGKICDAIEDLKVDCLVMGSRGLGLIKRVLLGSVSNYVVSNASCPVTVVKGTYKP*

Protein Length: 82

Fln nts: GAGGTTCTGGACATGCTGGACACGGTCCCAGGCAAAAAGAGGCAACTGTTGTAACTAAGGTTTACTGGGGTGATCCAAGGGAAAAATCTGTGATGCAATTGAAGATCTTAAGGTGGACTGCTTAGTCATGGGCAGCAGAGGCCTCGGACTCATCAAAAGAGTTTTACTTGGGAGCGTGAGCAATTATGTTGTGTCCAATGCATCCTGCCCAGTGACAGTAGTCAAAGGGACATATAAACCATAA___AGGAATGGATGGATTTA

Fln Alignment:

Contig3909___G*SKGKICDAIEDLKVDCLVMGSRGLGLIKRVLLGSVSNYVVSNASCPVTVVK
A9NQ10_________________GDAREKLCDAVEDLKLDSLVMGSRGLGQLKRVFLGSVSNYVISNASCPVTVVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain