SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3899

Length: 567 nt

UniGene Fasta

>biog2_v2.0_unigene3899
AGCAGATGTCTATTATTTAGAGGAATTTAGTGTTTCATGATCCCCGTGTCCGAGAAATGATGAACTTGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGCGGATAAGACGTGATACACTTGATAGAGGAAGAGATGTGAATTCTATCCTTGATCAGTATGCCAAGTTTGTCAAGCCATCTTTTGATGATTTTATACTACCTTCCAAAAAGTATGCTGATGTTATTATCCCACGAGGAGGAGACAACTATGTTGCAATCAATCTTATTGTGCAACACATTCAGACAAAGCTTGGACAACATGATCTGTGCAAGATTTATCCCAATCTCTATGTCATCCAAACTACTTTCCAGATTCGTGGGATGCATACACTCATACGGGATCGTGAAACCACAAAGCATGATTTTGTCTTTTACTCAGATCGGCTCATTCGATTGGTTGTTGAGAATGGCCTAGGCCATCTTCCGTTCACCGAAAAACATATCGTCACTCCTACAGGATCCATCTACACTGGAGTTGATTTCTGCAAAAAGTTGTGTGGAGTGTCAATTATCCGAA

Ace file of the UniGene biog2_v2.0_unigene3899

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene959	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative uracil phosphoribosyltransferase [Arabidopsis thaliana] sp\|Q9FKS0.1\|UKL1_ARATH RecName: Full=Uridine kinase-like protein 1, chloroplastic; Includes: RecName: Full=Uridine kinase; Short=UK; Includes: RecName: Full=Putative uracil phosphoribosyltra	-	-	80%
FL-Next	Isoform 2 of Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3	-	-	82%
Blast2go	uracil phosphoribosyltransferase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Uracil phosphoribosyltransferase.	EC:2.4.2.9	-	0.0	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Uridine kinase.	EC:2.7.1.48	-	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		90%
Blast2go	Drug metabolism - other enzymes	00983		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	90%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	90%
Blast2go	Lipopolysaccharide biosynthesis	00540	90%
Blast2go	Nicotinate and nicotinamide metabolism	00760	90%
Blast2go	Metabolic pathways	01100	90%

Source	GOs	Term	Type	Identity
Blast2go	UMP biosynthetic process	GO:0006222	Biological Process	90%
Blast2go	phosphorylation	GO:0016310	Biological Process	90%
Blast2go	uracil phosphoribosyltransferase activity	GO:0004845	Molecular Function	90%
Blast2go	uridine kinase activity	GO:0004849	Molecular Function	90%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	cytoplasm	GO:0005737	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-
Sma3	Protein of unknown function DUF1296	IPR009719	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VYB2-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 128 aas, your sequence is shorter than subject: 188 - 461

Fln protein: QMSII*RNLVFHDPRVREMMNLKIFVDTDADVRLARRIRRDTLDRGRDVNSILDQYAKFVKPSFDDFILPSKKYADVIIPRGGDNYVAINLIVQHIQTKLGQHDLCKIYPNLYVIQTTFQIRGMHTLIRDRETTKHDFVFYSDRLIRLVVENGLGHLPFTEKHIVTPTGSIYTGVDFCKKLCGVSIIR

Protein Length: 189

Fln nts: AGCAGATGTCTATTATTTAGAGGAATTTAGTGTTTCATGATCCCCGTGTCCGAGAAATGATGAACTTGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGCGGATAAGACGTGATACACTTGATAGAGGAAGAGATGTGAATTCTATCCTTGATCAGTATGCCAAGTTTGTCAAGCCATCTTTTGATGATTTTATACTACCTTCCAAAAAGTATGCTGATGTTATTATCCCACGAGGAGGAGACAACTATGTTGCAATCAATCTTATTGTGCAACACATTCAGACAAAGCTTGGACAACATGATCTGTGCAAGATTTATCCCAATCTCTATGTCATCCAAACTACTTTCCAGATTCGTGGGATGCATACACTCATACGGGATCGTGAAACCACAAAGCATGATTTTGTCTTTTACTCAGATCGGCTCATTCGATTGGTTGTTGAGAATGGCCTAGGCCATCTTCCGTTCACCGAAAAACATATCGTCACTCCTACAGGATCCATCTACACTGGAGTTGATTTCTGCAAAAAGTTGTGTGGAGTGTCAATTATCCGAA

Fln Alignment:

Contig3899___LVFHDPRVREMMNLKIFVDTXXXXXXXXXXXXXXXXXXXXVNSILDQYAKFVKPSFDDFILPSKKYADVIIPRGGDNYVAINLIVQHIQTKLGQHDLCKIYPNLYVIQTTFQIRGMHTLIRDRETTKHDFVFYSDRLIRLVVENGLGHLPFTEKHIVTPTGSIYTGVDFCKKLCGVSIIR
Q8VYB2-2_______________LIFHDPRVRDLMNMKIFVDADADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDFILPTKKYADIIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSKTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYSGVDFCKKLCGVSVIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain