SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3897

Length: 1393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3897 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26092	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	putative transmembrane protein kinase [Oryza sativa Japonica Group] dbj\|BAD67663.1\| putative transmembrane protein kinase [Oryza sativa Japonica Group] gb\|EEC79921.1\| hypothetical protein OsI_21484 [Oryza sativa Indica Group]	-	-	68%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	36%
Blast2go	lrr receptor-like serine threonine-protein kinase erecta-like	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	stomatal complex morphogenesis	GO:0010103	Biological Process	82%
Blast2go	embryo sac development	GO:0009553	Biological Process	82%
Blast2go	ovule development	GO:0048481	Biological Process	82%
Blast2go	transferase activity	GO:0016740	Molecular Function	82%
Blast2go	cell part	GO:0044464	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 376 aas, putative chimeric sequence, your sequence is shorter than subject: 98 - 998

Fln protein: LFELNLAGNHLEGPIPENISSCIALNYFNVHGNRLNGTIPLEFRKLDSLTYLNLSSNNIKGAIPVELGHIVNLDTLDLSKNHISGPIPGSVGDLEHL*

Protein Length: 99

Fln nts: AACTGTTCGAATTAAACCTTGCTGGAAATCATCTTGAAGGTCCGATTCCAGAGAACATTAGTTCATGCATTGCTCTCAATTACTTCAATGTACATGGCAACCGTTTGAATGGAACTATTCCTTTGGAATTTCGTAAACTTGACAGCCTCACTTATTTAAACCTGTCATCCAACAACATCAAGGGAGCAATTCCTGTAGAACTGGGACATATTGTAAATCTAGATACACTGGATCTATCTAAAAACCATATTTCTGGACCTATTCCGGGATCTGTTGGGGATTTGGAACATCTTTAA___AATTGAACTTGAGCGGAAATAAACTGAGTGGTTTTATCCCAGCGGAATTTGGAAACCTGAGAAGCATCGGTGATATAGACCTTTCTGCTAACCGATTAACAGGTCTCATTCCTCAAGAACTTGGACAGCTACAGAATTTGGTCTCACTGATACTGAATAACAACAGTTTGTCTGGGGAGGTGCCATACCAGTTGACCAACTGTTTCAGCCTTACTACACTAAATCTCTCCTACAACAATTTGTCTGGCAATATTCCTGTCATAAAGAACTTTACAAGATTTACCCCAGAAAGCTTTTTAGGAAATCCAGGTCTTTGTGGCAATTGGATTGGATCACTTTGTAGGATATACTCCAGACCATCGAAAGCTTCCGTCTCAACACCAGCTATTGTTTGCATCTCGTTGGGTTCAGTTTTATTAGTATGTATGATCATTATAGCTCTCTACCGTTCAAATCAGCCTAAGCCATTTACTAAAGGGGATGCGAACAAAATGGGTCAAGGTTCTCCAAGGTTAGTAATATTGCACATGGACATGGCCCTTCTCATGTATGATGACATAATGCGATTGACAGAAAATTTGAATGAGAAATATATAATTGGTTATGGGGCTACGAGCACAGTTTATAAATGTATTCTCAAGAATTGTAAGACAATTGCTATTAAAAGACTATACACACACCATCCACAAAGTTTGCGGGAATTCGAAACTGAGTTAGAGACTGTTGGAAGCATTAAGCATCGGAATCTTGTGAGTTTGCATGGTTATTCCCTTTCTCCACATGGCAATTTGTTGTTCTACGACTACATGGTGAATGGAAGTCTGTTTGACATCTTACATGGATCTTCGAAGAAGATTAAGATAGACTGGAACACGCGTCTAAAGATTGCTTTAGGAGCTGCACAAGGTCTAGCATATCTCCATCATGACTGCAACCCACGTATTATTCACAGAGATGTTAAAACTTCCAACATTCTCTTAGATGACAATTTTGAAGCACATTTGTCAGACTTTGGCATTGCCAAGTGTATCCCTTCTGCTAAAACCCACACCTCTACCTATGTTATGGGTACTATTGGTTATATTGACCCTGAATAT

Fln Alignment:

Contig3897___LFELNLAGNHLEGPIPENISSCIALNYFNVHGNRLNGTIPLEFRKLDSLTYLNLSSNNIKGAIPVELGHIV
Q19AV8_________________LGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNL-KLNTFDVSNNRLSGAVPLAFANPV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
296		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain