SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3888

Length: 292 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3888
ATCCCTTGGAGGGGGCGGTGGAAATCCTTTTTGGGGCAGCAAATGTGGGCGCAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGATCTTCTCATAGAGAAGGAATCTGTAGACGGTGAGGAATTCATGAGCCTGTTTATAGATGGCAAGGCCGAACTCTATGTGGGTTAGTTTTCCGAAAGTCGGTGTATTTATAACA

Ace file of the UniGene biog2_v2.0_unigene3888 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene746	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Precursor of protein cell division protease ftsh-like protein n=4 Tax=Magnoliophyta RepID=B9GQ31_POPTR	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	chloroplast protease	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	95%
Blast2go	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	95%
Blast2go	photosystem II repair	GO:0010206	Biological Process	95%
Blast2go	proteolysis	GO:0006508	Biological Process	95%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	95%
Blast2go	cell cycle	GO:0007049	Biological Process	95%
Blast2go	photoinhibition	GO:0010205	Biological Process	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	95%
Blast2go	metal ion binding	GO:0046872	Molecular Function	95%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	95%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	95%
Blast2go	integral to membrane	GO:0016021	Cellular Component	95%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	95%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Peptidase M41	IPR000642	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM83

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 41 aas, atg_distance in limit (1-15): atg_distance = 5, No stop codon before M and low homology subject, your sequence is shorter than subject: 74 - 142

Fln protein: MWAQKDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLADLLIEKESVDGEEFMSLFIDGKAELYVG*

Protein Length: 75

Fln nts: ATCCCTTGGAGGGGGCGGTGGAAATCCTTTTTGGGGCAGCAA_-_ATGTGGGCGCAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGATCTTCTCATAGAGAAGGAATCTGTAGACGGTGAGGAATTCATGAGCCTGTTTATAGATGGCAAGGCCGAACTCTATGTGGGTTAGTTTTCCGAAAGTCGGTGTATTTATAACA

Fln Alignment:

Contig3888___KDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLADLLIEKESVDGEEFMSL
B8LM83_________________KSMSTETRQLIETEVRDFLERAYGNAKTILTTHQKELHALAKALLEHETLSGNQIKAL

SNPs (tot: 5)

Position	C %	G %	T %	Probability
69	66		33	0.997452
245	33	66		0.997452
246	33	66		0.997452
247	33	66		0.997452
249	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain