SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3882

Length: 648 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3882 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22324	2/8
SustainPine v2.0	sp_v2.0_unigene23205	5/8

Source	Descriptions	Term	Type	Identity
AutoFact	translocon at inner membrane of chloroplasts 21 [Arabidopsis thaliana] gb\|AAD26904.1\| expressed protein [Arabidopsis thaliana] gb\|AAL09751.1\| At2g15290/F27O10.6 [Arabidopsis thaliana] gb\|AAL38691.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67464.1\| un	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	translocon at inner membrane of chloroplasts 21	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	iron ion transmembrane transport	GO:0034755	Biological Process	75%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	75%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	75%
Blast2go	copper uptake transmembrane transporter activity	GO:0015088	Molecular Function	75%
Blast2go	iron ion transmembrane transporter activity	GO:0005381	Molecular Function	75%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	75%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	75%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
459	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain