SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3870

Length: 1641 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3870 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21490	33/45
SustainPine v2.0	sp_v2.0_unigene30257	12/45

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9T4F7_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	beta-glucosidase 44-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amygdalin beta-glucosidase.	EC:3.2.1.117	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cyanoamino acid metabolism	00460		0.0	83%
Blast2go	Beta-mannosidase.	EC:3.2.1.25	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	cellobiose glucosidase activity	GO:0080079	Molecular Function	83%
Blast2go	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	83%
Blast2go	beta-mannosidase activity	GO:0004567	Molecular Function	83%
Blast2go	esculin beta-glucosidase activity	GO:0080082	Molecular Function	83%
Blast2go	4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	GO:0080081	Molecular Function	83%
Blast2go	beta-gentiobiose beta-glucosidase activity	GO:0080083	Molecular Function	83%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	83%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ09

Fln msg:

Fln protein: MEMGTMIVFLFLYINLCMAEQFVWQPGQEIDTSGLSRASFPKGFVFGTATSAYQVEGAAKSDGRGPSIWDTFISQPGIVANNATADVSVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPMFTKEQSQMVKGSIDFLGVNQYTAYYMYDPKQPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGIYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLHDTVRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKMSAYWFSKLLQRH*

Protein Length: 507

Fln nts: ATGGGGGAAGCTCAGAGTGTGAGCTAAGTGACCGAA_-_ATGGAGATGGGAACGATGATTGTCTTTCTTTTCCTTTATATAAATCTCTGCATGGCTGAGCAATTTGTATGGCAGCCAGGTCAAGAGATCGACACTAGCGGGCTGAGTAGAGCCAGTTTTCCCAAGGGTTTTGTGTTCGGAACGGCGACTTCGGCTTACCAGGTGGAAGGAGCTGCCAAGTCCGATGGACGAGGGCCGAGCATTTGGGATACTTTTATCAGTCAACCAGGGATTGTAGCTAACAATGCCACTGCCGATGTTTCGGTGGATGAATACCATCTCTACAAGAGCGATGTAGAGTTGATGGTAAAGATGAACATGGATGCCTACCGTTTCTCGATATCCTGGTCAAGGATTTTTCCAAAAGGAGCAGGTCGGATCAATTACAAGGGTGTCCAATATTACAATAATCTCATTAACTACCTGCTTAAAAGAGGTATCACGCCCTATGCAAATCTTTATCACTATGATTTACCCGAAGCCCTTGAAACAGCCTATGGAGGGTTGCTGAATTCTAGAGTTGTTGAGGACTATGCAAAATTTGCAGAGTTCTGCTTCAAAACCTTTGGTGACAGGGTGAAATACTGGATGACATTCAATGAGCCACGGGTTGTTGCTGCTCTTGGTTATGACAATGGCATTTTTGCTCCTGGAAGGTGCTCTGCTCCATTTGGGAACTGTACAGCAGGAAATTCTGCGACAGAACCCTACATTGTTGCACACAATTTGCTGCTTTCACATGCTACTGCTGTAAAAATTTATAGAGAAAAGTATCAGCCCATGCAAAAGGGAAAAATTGGGATACTTTTGGACTTTGTATGGTATGAGCCTCTTACAAATTCCAGTGAGGACCAGGGAGCGGCTCAAAGATCAAGGGATTTCCATATTGGATGGTTTCTCCATCCTATTACCTATGGGAAATATCCTGATTCTATGGTGGAAATTGTTGGGACAAGGCTGCCCATGTTTACAAAGGAACAGTCTCAAATGGTTAAAGGTTCAATAGACTTTCTAGGCGTTAACCAATACACTGCTTATTACATGTATGATCCTAAACAACCTAAACAAAATGTAACAGACTACCAGATGGACTGGAATACAGGCTTTGCATATGCTCGCAATGGAGTGCCTATTGGACCAAGGGCGAACTCCAATTGGCTTTACATTGTGCCTTGGGGTATATACAAGGCCGTCACATACGTAAAAGAACACTATGGAAATCCAACTATGATTCTCTCTGAAAATGGAATGGATGACCCTGGAAACGTGACACTTCCAGCAGGACTGCATGATACCGTCAGGGTTAACTACTATAAAAGCTATTTGCAAAATTTGATTAATGCAGTGAATGACGGGGCAAATGTGGTGGGATACTTTGCATGGTCTTTGCTGGATAATTTTGAGTGGAAGTCCGGATACACCTCAAGGTTTGGAGTGGTTTATGTGGATTTTACTACTCTGAAGCGATATCCAAAGATGTCAGCTTATTGGTTCTCGAAACTCCTCCAACGTCACTAG___TCACCCCAACTCTGCTGCAAGTGGTAGCACTAGTTATGTGTAATCTCTCCGGACTGAGAAGTTATAATATGCAAGTCCCACCATCCA

Fln Alignment:

Contig3870___MEMGTMIVFLFLYINLCMAEQFVWQPGQEIDTSGLSRASFPKGFVFGTATSAYQVEGAAKSDGRGPSIWDTFISQPGIVANNATADVSVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPMFTKEQSQMVKGSIDFLGVNQYTAYYMYDPKQPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGIYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLHDTVRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKMSAYWFSKLLQRH
B8LQ09_________________METGTMILFFFLCLNLCNAEPFVWQAGQEIDTGGLSRASFPKGFVFGTATSAYQVEGAAKTDGRGPSIWDTFILQPGIIANNATADVSVDEYHRYKTDVELMVKMNMDAYRFSISWSRIFPKGAGQINYKGVQYYNNLINYLLKRGITPYANLYHYDLPQGLETAYGGLLNSKVVDDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPIQKGKIGILLDFVWYEPLTNSSEDQAAAQRSRDFHIGWFLHPIVYGKYPDSMVEIVGKRLPKFTKEQYQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTGYQMDWNVGFAYARNGVPIGPKANSYWLYIVPWGLYKAVTYIKEHYGNPTMILSENGMDDPGNVTLPAGLHDTTRVNYYKSYLQNLIGAMNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTNLKRYPKMSAYWFSKLLQRH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1257	11		22	66	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain