SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3858

Length: 1269 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3858 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6100	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine aminopeptidase, putative n=1 Tax=Ricinus communis RepID=B9STR1_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	leucine aminopeptidase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	82%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	82%
Blast2go	metalloexopeptidase activity	GO:0008235	Molecular Function	82%
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	82%
Blast2go	vacuole	GO:0005773	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M17	IPR011356	-	-
Sma3	Peptidase M17, leucyl aminopeptidase, C-terminal	IPR000819	-	-
Sma3	Peptidase M17, leucyl aminopeptidase, N-terminal	IPR008283	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUY6

Fln msg: Overlapping hits, possible frame ERROR between 309 and 306, your sequence is shorter than subject: 335 - 613

Fln protein: PEFEQKFKYIQQVCSGVILSRQLVNAPANVITPSALANEASNIASAYSDILTAKILDVEQCEELKMGSYLGVAAASANPPKFIHLCYKPPTGDVKTKLAIVxxxLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACKQGVHKVVDLATLTGACIIALGNEIAGMYTPNDEMAEEISKAAEIAGEKFWRMPLEESYWESMKSGIADMVNTGGRQGGSITAALFLKQFVDENVQWLHIDMAGPVWSDKKRGATGFAVSTLVEWVVENSS*

Protein Length: 336

Fln nts: CCTGAGTTTGAACAGAAGTTCAAGTATATCCAGCAAGTTTGTTCTGGAGTTATTCTATCTAGGCAACTTGTAAATGCACCTGCAAACGTAATTACTCCTAGTGCACTTGCAAACGAAGCGTCCAACATTGCCTCTGCTTACAGTGATATACTCACTGCAAAGATATTGGATGTAGAGCAATGTGAAGAGTTGAAAATGGGATCATATTTAGGAGTGGCTGCAGCATCTGCAAACCCTCCAAAGTTCATTCACCTTTGCTACAAGCCTCCAACTGGAGATGTTAAGACTAAACTTGCCATAGTCxxxxxxxxxTTGACATTTGATAGTGGAGGTTACAACATCAAGACAGGACCAGGATGTCTTATTGAACTCATGAAGTTTGACATGGGAGGTTCTGCAGCAGTTCTTGGTGCAGCAAAGGCTATTGGTCAAATTAAACCTCCCGGGGTGGAGGTCCATTTCATTGTTGCTGCATGTGAAAACATGATTAGTGGCACTGGTATGCGGCCTGGTGACATAGTTACAGCTTCAAACGGGAAGACAATTGAGGTAAATAACACGGATGCTGAAGGCAGGTTGACATTGGCAGATGCTTTGGTTTATGCATGTAAACAAGGCGTTCATAAGGTGGTCGATCTTGCAACTCTCACTGGAGCCTGCATAATTGCTCTTGGAAATGAAATTGCTGGAATGTACACTCCTAATGATGAAATGGCAGAAGAAATATCCAAAGCTGCAGAAATTGCAGGAGAAAAGTTTTGGAGAATGCCACTTGAGGAAAGCTATTGGGAATCAATGAAATCTGGGATTGCTGATATGGTGAACACTGGAGGCCGTCAAGGTGGCTCCATCACTGCTGCACTTTTTCTTAAGCAGTTTGTGGATGAAAATGTGCAATGGCTGCATATAGACATGGCTGGACCAGTGTGGAGTGATAAGAAACGTGGTGCAACAGGATTTGCTGTCTCAACCTTGGTTGAATGGGTTGTGGAAAACTCATCATGAATACTAGCTGAACAAAAGGGGTTCTGTTGACGTTTATTATTTCAATATTTCTGTGAACATGGTATTATCATCCTAGTTGTCTAAGAGCTTAGAATTAATGTTTATTAATTTTGAGGTTCATATGAAGCTACGTGGGTAGATTCTGTAGGATGCAGGGCTGCTTTATTTTAAATATCTTCTTATTGTGGCACAGATCAACTGGTCTGCTGTATCTTCTTTTCTGGCATGGATTGACTGGTCAATAAATATGAAGATGGGGGAGAGT

Fln Alignment:

Contig3858___PEFEQKFKYIQQVCSGVILSRQLVNAPANVITPSALANEASNIASAYSDILTAKILDVEQCEELKMGSYLGVAAASANPPKFIHLCYKPPTGDVKTKLAIVGxGLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACKQGVHKVVDLATLTGACIIALGNEIAGMYTPNDEMAEEISKAAEIAGEKFWRMPLEESYWESMKSGIADMVNTGGRQGGSITAALFLKQFVDENVQWLHIDMAGPVWSDKKRGATGFAVSTLVEWVVENSS
A9NUY6_________________PEFEQKFEYIQQVCSGVILSRQLVNAPANVITPSALANEASNIASAYSNVLTAKILDVEQCKELKMGSYLGVAAASANPPKFIHLCYKPPTGDVKIKLAIVGxGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACKQGVDKVVDLATLTGACVVALGNDIAGMFTPNDEMAEEISKAAEIAGEKFWRMPLEENYWESMKSGIADMVNTGGRQGGSITAALFLKQFVDENVQWLHIDMAGPVWSEKKRGATGFAVSTLVEWVLENSS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
691		40		60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain