SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3853

Length: 412 nt

UniGene Fasta

>biog2_v2.0_unigene3853
TAAGATGCTCTCTGCTTTAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAAAAAGCTGAAAGCTTTACTGCAGAGTGCGAGCCTTCCAGCAACTGAAAGGAATGTTACAACAATGCTGCATTTTCTCAATGCAGACAAGGAAGATTCGGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCCACAGAACTCATTGTTAATGATCCATGGACAATATGGTTCGAGGCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAAGAAAGAATCGAACACTGACAAGATATACTCAAGATATATGGAAGATTGGCCCCTTGGTGTCAAGACTTTCTAATTGCAAGTCCACTTCAAACGTTGTCTCATCTTGCAACACAAATGTGG

Ace file of the UniGene biog2_v2.0_unigene3853

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27532	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitochondrial carrier protein [Arabidopsis thaliana]	-	-	2.8026e-45	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	mitochondrial substrate carrier family protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8H3

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 137 - 247

Fln protein: *DALCFNSVSLCNCGTIHKKKLKALLQSASLPATERNVTTMLHFLNADKEDSVSYSQFRNFMLFVPTELIVNDPWTIWFEAATRRSTDMLLQTVPAVRKNRTLTRYTQDIWKIGPLVSRLSNCKSTSNVVSSCNTNV

Protein Length: 138

Fln nts: TAAGATGCTCTCTGCTTTAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAAAAAGCTGAAAGCTTTACTGCAGAGTGCGAGCCTTCCAGCAACTGAAAGGAATGTTACAACAATGCTGCATTTTCTCAATGCAGACAAGGAAGATTCGGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCCACAGAACTCATTGTTAATGATCCATGGACAATATGGTTCGAGGCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAAGAAAGAATCGAACACTGACAAGATATACTCAAGATATATGGAAGATTGGCCCCTTGGTGTCAAGACTTTCTAATTGCAAGTCCACTTCAAACGTTGTCTCATCTTGCAACACAAATGTGG

Fln Alignment:

Contig3853___FNSVSLCNCGTIHXXXXXXXXXXXXXPATERNVTTMLHFLNADKEDSVSYSQFRNFMLFVPTELIVNDPWTIWFEAATRRSTDMLLQTVPAVRKNRTLTRYTQDIWKIGPLVSRL
D5A8H3_________________FNSVRLCNCGTIHKSNLKALLQSASLPATERNVTAMLNFLNSDKEDSVSYSQFRNFMLFVPTDLIVNDPWTIWFEAATRTSTDMLLQTVPAVGKNRTLPSYTPDIWKIGPLVSSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain