SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3851

Length: 1171 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3851 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22512	23/24
SustainPine v2.0	sp_v2.0_unigene76978	1/24

Source	Descriptions	Term	Type	Identity
AutoFact	Ormdl, putative n=2 Tax=rosids RepID=B9SBD8_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	orm1-like protein 2	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	ORMDL	IPR007203	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P262

Fln msg: Overlapping hits, possible frame ERROR between 476 and 473,

Fln protein: MRNLYVEAVQPVDLNKNTSWFQYPGVWTIYIFILFFSWLVILSLLGCTAGTAWTIVHLAHFAVTYxxxHWKKGTPFSEDQGMYNKLTWWEQMDNGKQLTRNRKFLTVVPVVLYLIASHTTDYRNPWLFLNTIAVLVLVIAKFPNMHKVRILGINADYPI*

Protein Length: 161

Fln nts: GATAATAACACATGTGATAATAAAGACATCGCACACAGCTGCCCAGTAATACATGAAGGCTCTGAGAATCCCGTTCCATTTTAAATCGCCCACTTTCTTCCCTGTGGATACTTCATAACCTCGAGCGGCGACTTGTGAACTGACTTGGCAAGCCAACATGGCAATTGAATGAGAGTTTCATTTTCAACCCTTTAAAACGTTTTGCTTCGGCTACCCTGCCTCTCTTTTGCTTCGGGAAGGAGCAAAAATCTGAGATCGTGGGCGCGCAAGTAAGA_-_ATGAGGAATCTGTATGTGGAGGCAGTGCAACCAGTGGATTTGAACAAGAACACATCCTGGTTTCAATACCCGGGGGTGTGGACGATCTACATCTTCATCCTCTTCTTCTCATGGCTCGTCATTCTGTCTCTCTTGGGCTGCACAGCCGGCACGGCCTGGACGATCGTGCATCTTGCCCATTTTGCGGTAACTTACxxxxxxxxxCACTGGAAGAAGGGAACTCCTTTTTCAGAAGATCAAGGAATGTACAACAAGCTAACATGGTGGGAGCAGATGGATAATGGCAAACAGCTTACCCGTAACAGGAAATTTTTGACTGTAGTTCCCGTAGTACTGTACTTAATTGCATCTCACACGACTGACTACAGAAATCCTTGGCTTTTTTTGAACACAATTGCTGTGCTTGTGCTGGTTATTGCAAAGTTTCCAAACATGCACAAAGTTCGAATTCTAGGGATCAATGCAGACTACCCTATTTGA___GAAGTAATTCTATTAAAGCAGTATAACCATGTCCTTTTTAATTTGCACTTGTTATCTGCCTTCAGTCCATGAACTGTTGAATAGAGCTTTTTGTGTTTGGGGGCAACTGTTCAGGTTCTGATTGTTAAATATGTCTAAATTCCAAGTGTCCTTGGATGAGCATGGCCTGCTGGCACTATCACATATTCTTCAACAAGCTTTTCTGACATTAAGCTTGGAGTATCTGCCTGTATGTTTCTTATACTTTGTACAGATGTTCCCAAGCATTGGAGTTTCTTCTGTAATTTACATTTTTGGGTTTTGTAGGCAGATTCTTTCTGCGTCATGTGTAACTTTCTTTGCATGTAAAAGAATTCTGCCAAGGCAGTCCTACACATCAAATTGCTTACCCAAGACAACATCTTAAGATTGGGGTGG

Fln Alignment:

Contig3851___NLYVEAVQPVDLNKNTSWFQYPGVWTIYIFILFFSWLVILSLLGCTAGTAWTIVHLAHFAVTYHxFHWKKGTPFSEDQGMYNKLTWWEQMDNGKQLTRNRKFLTVVPVVLYLIASHTTDYRNPWLFLNTIAVLVLVIAKFPNMHKVRILGINADYPI
A9P262_________________NLYVQAVPPPDLNKNTSWFMYPGVWTTYILILFFTWIIVLSLFRCTAGTAWTIVNLFHFAVTYHxFHWKKGTPFSEDQGIYNKLTWWEQVDNGKQLTRNRKFLTVVPVVLYLIASHTTDYRNPWLFLNTIAVLVLVIAKFPNMHKVRIFGINSDYPI

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
188	83		16		0.994512
320		80	20		0.995493
327	80		20		0.995493
329	80		20		0.995493
331	80			20	0.995493
334		20		80	0.995493
446		11		88	0.923564
447	88	11			0.923564
448		22	77		0.999999
449	88	11			0.923564
515	85	14			0.993533
516	85	14			0.993533
517	85	14			0.993533
520			85	14	0.993533
542		75		25	1.0
554	87	12			0.992554
899		16		83	0.994512
953	66	33			1.0
954		33	66		1.0
958			66	33	1.0
959	20		80		0.995493
960	20		80		0.995493
1025		25	75		0.996473
1028	75	25			0.996473
1029	75	25			0.996473
1030	25		75		0.996473
1067		33	66		0.997452
1068		33		66	0.997452
1069	66	33			0.997452
1070		33	66		0.997452
1071	33		66		0.997452
1072			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain