SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3847

Length: 484 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3847
TATTGGGGACAGTCAACATGGTTAGTAGAAAATGGGAACCTGAATCAGTAGCAGACTCACAGTTCCCCAAAGAAGCGACTCCGACGATTTCAATTCTTTCAGGTTACCCAGTAACAGGCCTAGCCAAGTCTTACCTTTGTTAACTTCGGCCATTAAAGTTTTTAGAGGCGAACCAGGATGGAAGGATTGCATTTGGGTTATTGGAATGTCAATCTGAGATCTATAATTTGAATTGTTTTAACCTTCAGGTATCAATAAATGGACAATCTGTATGCACCGGCATGCGCTTAAGGCCGAACTCAACTCCTATTCGCACTAGATTATTGTTTTCATTGAAAGCTCGCCATGATCACAGCCATTTCCATCAATTCAGGTCCACCTCCACCCTGTGTCCCCATAAATTCTCGGGTTATTTCCTTAGTAAAATGCGGCACATCAGGACTGCTGCTTCCTATCGATTCCCGTGATAATCTGAGATGGGCAA

Ace file of the UniGene biog2_v2.0_unigene3847 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20934	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	unknown [Picea sitchensis]	-	-	8.57292e-09	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG4

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 46 - 288

Fln protein: MITAISINSGPPPPCVPINSRVISLVKCGTSGLLLPIDSRDNLRWA

Protein Length: 47

Fln nts: TATTGGGGACAGTCAACATGGTTAGTAGAAAATGGGAACCTGAATCAGTAGCAGACTCACAGTTCCCCAAAGAAGCGACTCCGACGATTTCAATTCTTTCAGGTTACCCAGTAACAGGCCTAGCCAAGTCTTACCTTTGTTAACTTCGGCCATTAAAGTTTTTAGAGGCGAACCAGGATGGAAGGATTGCATTTGGGTTATTGGAATGTCAATCTGAGATCTATAATTTGAATTGTTTTAACCTTCAGGTATCAATAAATGGACAATCTGTATGCACCGGCATGCGCTTAAGGCCGAACTCAACTCCTATTCGCACTAGATTATTGTTTTCATTGAAAGCTCGCC_-_ATGATCACAGCCATTTCCATCAATTCAGGTCCACCTCCACCCTGTGTCCCCATAAATTCTCGGGTTATTTCCTTAGTAAAATGCGGCACATCAGGACTGCTGCTTCCTATCGATTCCCGTGATAATCTGAGATGGGCAA

Fln Alignment:

Contig3847___MITAISINSGPPPPCVPINSRVISLVKCGTSGLLLPIDSRDNLRWA
A9NYG4_________________MITAIPIISGPPPNCVPTNSRTNSLVKCGTAGVLLPTNSCDNLRWA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
62		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain