SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3842

Length: 242 nt

UniGene Fasta

>biog2_v2.0_unigene3842
ATGGGGAGAAGAAATGCGGTTTCCAGGAAAAATGGTGCGAACTATGGCGTCCTCCAAGTTCGAACCCTCGCTTCTTCTGGTTCTTCTGTGTTTTTCCCTTAATTTGATTGCGGGAACAACAGCAAAGGAACAGAAACATAAATTCCAGAAACAATTGACGGCATGCAACCCTCCGTTATTTGTTTTCGGAGCGTCACTGTTAGACGTGGGAGAGAACGCAGCGGCCATGCCCGGCCGCTCCG

Ace file of the UniGene biog2_v2.0_unigene3842

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2024	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to the GDSL family of lipolytic enzymes [Arabidopsis thaliana]	-	-	7.00649e-44	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	gdsl esterase lipase	-	-	0.0	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	53%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P117

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 76 - 391

Fln protein: MRFPGKMVRTMASSKFEPSLLLVLLCFSLNLIAGTTAKEQKHKFQKQLTACNPPLFVFGASLLDVGENAAAMPGRS

Protein Length: 77

Fln nts: ATGGGGAGAAGAA_-_ATGCGGTTTCCAGGAAAAATGGTGCGAACTATGGCGTCCTCCAAGTTCGAACCCTCGCTTCTTCTGGTTCTTCTGTGTTTTTCCCTTAATTTGATTGCGGGAACAACAGCAAAGGAACAGAAACATAAATTCCAGAAACAATTGACGGCATGCAACCCTCCGTTATTTGTTTTCGGAGCGTCACTGTTAGACGTGGGAGAGAACGCAGCGGCCATGCCCGGCCGCTCCG

Fln Alignment:

Contig3842___MVRTMASSKFEPSXXXXXXXXXXXXIAGTTAKEQKHKFQKQLTACNPPLFVFGASLLDVGENAAAMPGRS
A9P117_________________MTRTMACSKFQPLLLLALLFCPLNLMAETTAKEQRHIYVKQ-SPCRPPLFVFGASLLDVGENAAAMPGRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain