SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3841

Length: 317 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3841
AGAAGAGTTTAATGGATCGGTTACTTACTGATACAAAATCAGCAGTACTTTCTATCCCTAAAAGTTGCAGGGTCTTGACTATTCATGGCTCCAGGGATGAGATTGTTCCTGTAACAAACGCATTTGAATTTGATAAGTTTATTGCAAATCACCAGCTTCATGTTATTGACGAAGCAGATCATAATTATACCTGCCATCAGAATGAAGTAGCATATGTTGTTCTAAATTCATTAAGGCTAGTTGGGAGGCATCTACTGAAAATAGATCACTCAGTGCCTTGTCCAACAAGAGGGAACATAGTTTCTTGCAAACTATGA

Ace file of the UniGene biog2_v2.0_unigene3841 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1697	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1073 Hydrolases of the alpha/beta superfamily	-	-	3.0e-10	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	uncharacterized protein ydl057w-like	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Protein of unknown function DUF1749	IPR013744	-	-
Sma3	BAAT/Acyl-CoA thioester hydrolase C-terminal	IPR014940	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMV8

Fln msg: your sequence is shorter than subject: 105 - 266

Fln protein: KSLMDRLLTDTKSAVLSIPKSCRVLTIHGSRDEIVPVTNAFEFDKFIANHQLHVIDEADHNYTCHQNEVAYVVLNSLRLVGRHLLKIDHSVPCPTRGNIVSCKL*

Protein Length: 106

Fln nts: AGAAGAGTTTAATGGATCGGTTACTTACTGATACAAAATCAGCAGTACTTTCTATCCCTAAAAGTTGCAGGGTCTTGACTATTCATGGCTCCAGGGATGAGATTGTTCCTGTAACAAACGCATTTGAATTTGATAAGTTTATTGCAAATCACCAGCTTCATGTTATTGACGAAGCAGATCATAATTATACCTGCCATCAGAATGAAGTAGCATATGTTGTTCTAAATTCATTAAGGCTAGTTGGGAGGCATCTACTGAAAATAGATCACTCAGTGCCTTGTCCAACAAGAGGGAACATAGTTTCTTGCAAACTATGA___

Fln Alignment:

Contig3841___KSLMDRLLTDTKSAVLSIPKSCRVLTIHGSRDEIVPVTNAFEFDKFIANHQLHVIDEADHNYTCHQNEVAYVVLNSLR
A9NMV8_________________EGLMDRLQTDMKSAALSIPKNCRVLTIHGSEDETIPVTDAFEFDKLITNHVLHVMDGADHCYNFHQNELASVVLKFMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain