SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3840

Length: 469 nt

UniGene Fasta

>biog2_v2.0_unigene3840
GTAAAGGACATGGGGAATTCTTGGTGGCCTTAAGCATGGATGTAAACATATCCAGCGCTTCACAGGTATCATTTCCATGCCCGCTATCGCTTGCATTCTCATTATTGCATCCTCTGAATAGGGCAGGCTCTCTAAATTGTAGGGCGGTTGCCTGCTCCAAGCGGCGCCAACGCGTATTTTGTGCTGCTACCACAAACTCCAATGAAAATTCACCTGTCCCGGACTCATCGTCAGGCAGAATCCAAGCTCAAGCTCGACAACCTTCTGAACTCGACCCTGCGGCCCAGTTTTCGTCGCTTGCCAATGCATTCAGCAGGCGGCTAGCACTGGGAATTGTTGGGGCGTCGATTGTTGCAATTGGAGGAAATTTAGGCGGTATCACCAGCCTGCTCCTGGGTTTCGAACCCCAGATCTCACGGGACCTTAAACTTGATGCAGTGTACCCTGTCCGGGGCTACAAGCGATGCTA

Ace file of the UniGene biog2_v2.0_unigene3840

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3605	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem II reaction center PsbP family protein [Arabidopsis thaliana] gb\|AAF64541.1\| unknown protein [Arabidopsis thaliana] gb\|AAV31159.1\| At3g05410 [Arabidopsis thaliana] gb\|AAW78584.1\| At3g05410 [Arabidopsis thaliana] gb\|AEE74235.1\| Photosystem II r	-	-	9.99995e-41	55%
FL-Next	tr=Predicted protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	52%
Blast2go	photosystem ii reaction center family protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane part	GO:0044425	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II PsbP, oxygen evolving complex	IPR002683	-	0.0	-
Sma3	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7L3U0

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 144 - 176

Fln protein: MDVNISSASQVSFPCPLSLAFSLLHPLNRAGSLNCRAVACSKRRQRVFCAATTNSNENSPVPDSSSGRIQAQARQPSELDPAAQFSSLANAFSRRLALGIVGASIVAIGGNLGGITSLLLGFEPQISRDLKLDAVYPVRGYKRC

Protein Length: 145

Fln nts: GTAAAGGACATGGGGAATTCTTGGTGGCCTTAAGC_-_ATGGATGTAAACATATCCAGCGCTTCACAGGTATCATTTCCATGCCCGCTATCGCTTGCATTCTCATTATTGCATCCTCTGAATAGGGCAGGCTCTCTAAATTGTAGGGCGGTTGCCTGCTCCAAGCGGCGCCAACGCGTATTTTGTGCTGCTACCACAAACTCCAATGAAAATTCACCTGTCCCGGACTCATCGTCAGGCAGAATCCAAGCTCAAGCTCGACAACCTTCTGAACTCGACCCTGCGGCCCAGTTTTCGTCGCTTGCCAATGCATTCAGCAGGCGGCTAGCACTGGGAATTGTTGGGGCGTCGATTGTTGCAATTGGAGGAAATTTAGGCGGTATCACCAGCCTGCTCCTGGGTTTCGAACCCCAGATCTCACGGGACCTTAAACTTGATGCAGTGTACCCTGTCCGGGGCTACAAGCGATGCTA

Fln Alignment:

Contig3840___ARQPS---ELDPAAQFSSLANAFSRRLALXXXXXXXXXXXXNLGGITSLLLGFEPQISRDLKLDAVYPVRGYKRC
D7L3U0_________________AQQPSGDRKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAVGANFGGITSFVLGLSPEVGRNLKLDVVYPIGGYSRC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
86		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain