SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3816

Length: 294 nt

UniGene Fasta

>biog2_v2.0_unigene3816
GCCAGAATTTGCCGAGTTGATGCGAAGATTGGGTGCTCTTGGTGATGGAAGCGGAGATGGAAAAACACTATGGGAAGACGAATGGGAGGCAGCATATTTGTATTCAGTGTTTGTCATGCGAAAGAGTGGCCAAGAGGAATCTCATAAGAAGAACATGCGGCGCAGGCCCCTGAGTCAAATAAGACAGGAGGATGTCATGTATCTTCCTTGCCAACCATGACAATAGGGTTTGTTCTTGGGCTTTACCAAGTTTGAAATCCTTGTTTTTCCTGAAGATTGTTTTCAAGAAGCAGA

Ace file of the UniGene biog2_v2.0_unigene3816

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene105	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	mRNA cap guanine-N7 methyltransferase n=1 Tax=Picea sitchensis RepID=C0PS33_PICSI	-	-	92%
FL-Next	sp=mRNA cap guanine-N7 methyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	mrna cap guanine-n7 methyltransferase 1	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	mRNA (guanine-N(7)-)-methyltransferase.	EC:2.1.1.56	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	mRNA capping	GO:0006370	Biological Process	83%
Blast2go	methylation	GO:0032259	Biological Process	83%
Blast2go	mRNA (guanine-N7-)-methyltransferase activity	GO:0004482	Molecular Function	83%
Blast2go	RNA binding	GO:0003723	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS33

Fln msg: your sequence is shorter than subject: 73 - 371

Fln protein: PEFAELMRRLGALGDGSGDGKTLWEDEWEAAYLYSVFVMRKSGQEESHKKNMRRRPLSQIRQEDVMYLPCQP*

Protein Length: 74

Fln nts: GCCAGAATTTGCCGAGTTGATGCGAAGATTGGGTGCTCTTGGTGATGGAAGCGGAGATGGAAAAACACTATGGGAAGACGAATGGGAGGCAGCATATTTGTATTCAGTGTTTGTCATGCGAAAGAGTGGCCAAGAGGAATCTCATAAGAAGAACATGCGGCGCAGGCCCCTGAGTCAAATAAGACAGGAGGATGTCATGTATCTTCCTTGCCAACCATGA___CAATAGGGTTTGTTCTTGGGCTTTACCAAGTTTGAAATCCTTGTTTTTCCTGAAGATTGTTTTCAAGAAGCAGA

Fln Alignment:

Contig3816___PEFAELMRRLGALGDGSGDGKTLWEDEWEAAYLYSVFVMRKSGQEESHKKNMRRRPLSQIRQEDVMYLPCQP
C0PS33_________________PEFAELMRRLGALGDGSGDGRTLSEDEWEAAYLYLVFVMRKSGQGDSLKKNTQRRSLSQIRQEDVMYLPCQP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain