SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3815

Length: 488 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3815
CACAGCAATATTTGCATTTATAATAACATGTAAGAGGGAGTCTTCTGTGGTTTATATGGCTTTGGTGCCTGTGGTATTTGGCATTGTTATTGCAAGCAACAGTGAGCCATTATTCCACCTTTTTGGCTTTTTGGTTTGCCTAGGATCAACTGCTGCCAGAGCATTGAAATCAGTTGTTCAGGGGCTCCTGCTTACCTCTGAGGCAGAGAAGCTTCACTCTATGAATTTGCTCATGTACATGGCACCAATTGCTGCGCTGTTATTGCTTCCGGTTACTCTTTTTGTGGAGGGTAATGTATTAGCTATTACTATTGAAAAAGCCAGAGAAAACACCTTGATCATATTCCTGCTGCTTGGAAACATGACCATGGCTTATCTTGTGAATTTAACCAACTTTCTTGTTCAAAACATACGAGTGCCCTCACGTTGCAGGTTTTAGGAAATGCCAAGGCCGCCGTTGCAGCTGTTATTTCCGTCCTAATCTTCAA

Ace file of the UniGene biog2_v2.0_unigene3815 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6861	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp\|Q9LDH3.1\|PT112_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At1g12500 gb\|AAF79651.1\|AC025416_25 F5O11.25 [Arabidopsis thaliana] gb\|AAF88101.1\|AC025417_29 T12C24.5	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	solute carrier family 35 member e4	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	organic anion transmembrane transporter activity	GO:0008514	Molecular Function	0.0	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	0.0	-
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN72

Fln msg: your sequence is shorter than subject: 146 - 277

Fln protein: TAIFAFIITCKRESSVVYMALVPVVFGIVIASNSEPLFHLFGFLVCLGSTAARALKSVVQGLLLTSEAEKLHSMNLLMYMAPIAALLLLPVTLFVEGNVLAITIEKARENTLIIFLLLGNMTMAYLVNLTNFLVQNIRVPSRCRF*

Protein Length: 147

Fln nts: CACAGCAATATTTGCATTTATAATAACATGTAAGAGGGAGTCTTCTGTGGTTTATATGGCTTTGGTGCCTGTGGTATTTGGCATTGTTATTGCAAGCAACAGTGAGCCATTATTCCACCTTTTTGGCTTTTTGGTTTGCCTAGGATCAACTGCTGCCAGAGCATTGAAATCAGTTGTTCAGGGGCTCCTGCTTACCTCTGAGGCAGAGAAGCTTCACTCTATGAATTTGCTCATGTACATGGCACCAATTGCTGCGCTGTTATTGCTTCCGGTTACTCTTTTTGTGGAGGGTAATGTATTAGCTATTACTATTGAAAAAGCCAGAGAAAACACCTTGATCATATTCCTGCTGCTTGGAAACATGACCATGGCTTATCTTGTGAATTTAACCAACTTTCTTGTTCAAAACATACGAGTGCCCTCACGTTGCAGGTTTTAG___GAAATGCCAAGGCCGCCGTTGCAGCTGTTATTTCCGTCCTAATCTTCAA

Fln Alignment:

Contig3815___TAIFAFIITCKRESSVVYMALVPVVFGIVIASNSEPLFHLFGFLVCLGSTAARALKSVVQGLLLTSEAEKLHSMNLLMYMAPIAALLLLPVTLFVEGNVLAITIEKARENTLIIFLLLGNMTMAYLV
B8LN72_________________TAIFAFVITCKRESSVVYMALVPVVFGIVIASNSEPLFHLFGFLVCLGSTAARALKSVVQGLLLTSEAEKLHSMNLLMYMAPIAALLLLPVTLFVEGNVAAITIEKAKENPLIIFLLLGNMTMAYLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain