SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3795

Length: 466 nt

UniGene Fasta

>biog2_v2.0_unigene3795
CATTCCCTGGTCCTGGCTTAGCTGTACGTTATTTTGGGTGATGTCACTGAAGGAAATGCCTTGGATACCATACGCCTGGTTGATGAGATCTTTATCAATTCAATCAAGGATGCTGGACTATATGATTCAATTTGGCAAGCTTTCGCAGTTTTTTTGCCAGTAAAGACTGTTGGTGTGCAAGGTGATAAGAGGACTCACTCACATGCAGTTGCATTGAGAGCAATCACTAGTGAGGATGGAATGACTGCAGACTGGTATCAATTTGATCCCAAGTTCCTTGCAGAGGTTTCTGCGAAGATTTGCAACAGTGTTCGTGGAGTAAATAGAATAGTTTATGACATAACCTCAAAACCTCCATCAACTGTAGAGTGGGAGTGATGTGCATAATACATAAATTGCATGATTTTGTATTATTTATTTGTGGTGAACCACAATTAAATAATACTATTTCCTGGTTATCTTCCTG

Ace file of the UniGene biog2_v2.0_unigene3795

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8402	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative GMP synthase [Arabidopsis thaliana]	-	-	71%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	87%
Blast2go	gmp synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	GMP synthase (glutamine-hydrolyzing).	EC:6.3.5.2	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		83%
Blast2go	Drug metabolism - other enzymes	00983		83%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	83%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	83%
Blast2go	Nitrogen metabolism	00910	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	83%
Blast2go	tRNA processing	GO:0008033	Biological Process	83%
Blast2go	asparagine biosynthetic process	GO:0006529	Biological Process	83%
Blast2go	GMP biosynthetic process	GO:0006177	Biological Process	83%
Blast2go	GMP synthase (glutamine-hydrolyzing) activity	GO:0003922	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	transferase activity	GO:0016740	Molecular Function	83%
Blast2go	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3		IPR000991	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR018318	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9RGM9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 126 - 542

Fln protein: HSLVLA*LYVILGDVTEGNALDTIRLVDEIFINSIKDAGLYDSIWQAFAVFLPVKTVGVQGDKRTHSHAVALRAITSEDGMTADWYQFDPKFLAEVSAKICNSVRGVNRIVYDITSKPPSTVEWE*

Protein Length: 127

Fln nts: CATTCCCTGGTCCTGGCTTAGCTGTACGTTATTTTGGGTGATGTCACTGAAGGAAATGCCTTGGATACCATACGCCTGGTTGATGAGATCTTTATCAATTCAATCAAGGATGCTGGACTATATGATTCAATTTGGCAAGCTTTCGCAGTTTTTTTGCCAGTAAAGACTGTTGGTGTGCAAGGTGATAAGAGGACTCACTCACATGCAGTTGCATTGAGAGCAATCACTAGTGAGGATGGAATGACTGCAGACTGGTATCAATTTGATCCCAAGTTCCTTGCAGAGGTTTCTGCGAAGATTTGCAACAGTGTTCGTGGAGTAAATAGAATAGTTTATGACATAACCTCAAAACCTCCATCAACTGTAGAGTGGGAGTGA___TGTGCATAATACATAAATTGCATGATTTTGTATTATTTATTTGTGGTGAACCACAATTAAATAATACTATTTCCTGGTTATCTTCCTG

Fln Alignment:

Contig3795___ILGDVTEGNALDTIRLVDEIFINSIKDAGLYDSIWQAFAVFLPVKTVGVQGDKRTHSHAVALRAITSEDGMTADWYQFDPKFLAEVSAKICNSVRGVNRIVYDITSKPPSTVEWE
A9RGM9_________________ILGDVTQDGALDTIRLVDEIFVNSIREAGLYDKIWQAFAVYLPVKTVGVQGDKRTHSHAVALRAITSEDGMTADWFHFDGKFLAEVSSKICNSVRGINRVVYDITSKPPSTVEWE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
235		66	33	0.997452
238		33	66	0.997452
388	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain