SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3790

Length: 485 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3790
GATTTAATCTGGGTGATCAGCAGCCTATTGTTGCTCAAGTTGGAAGTCCTGACATGGTGATTTGATCATATTCTCTTTTTCGAGGAAGACCATTATGCCATTATTTCACAAGGGTTGAATCCTTTCAGAAGATCCAGAGCATCCAATCATGTGGAGCTTTGCATCAAATGCTATATCTGGAACAATGGGGTTTAAGGGCAGAGAAACTTCTGTATGCTCAGATGATGAAGCTTCTTCCAGGAAAAGTGCAGAGGAAAGATTGGAGTGTCCTATATGCTGGGAGTCATTCAATATTGTAGAGAATGTACCATATGTCTTGTGGTGTGGTCACACTCTCTGCAAAAACTGTGTTCTTGGCCTTCAATGGGCAACTGTGAAATTTCCTACGCTACCTGTTCAGCTGCCTCTGTTCATTTCTTGCCCATGGTCCCAACTCTTATCCTTTAGGTTGGTTTGGAAAGGATGCCTTAAGTTTCCACGAAAGA

Ace file of the UniGene biog2_v2.0_unigene3790 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3795	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ring zinc finger	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAG2

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 112 - 260

Fln protein: MWSFASNAISGTMGFKGRETSVCSDDEASSRKSAEERLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWATVKFPTLPVQLPLFISCPWSQLLSFRLVWKGCLKFPRK

Protein Length: 113

Fln nts: GATTTAATCTGGGTGATCAGCAGCCTATTGTTGCTCAAGTTGGAAGTCCTGACATGGTGATTTGATCATATTCTCTTTTTCGAGGAAGACCATTATGCCATTATTTCACAAGGGTTGAATCCTTTCAGAAGATCCAGAGCATCCAATC_-_ATGTGGAGCTTTGCATCAAATGCTATATCTGGAACAATGGGGTTTAAGGGCAGAGAAACTTCTGTATGCTCAGATGATGAAGCTTCTTCCAGGAAAAGTGCAGAGGAAAGATTGGAGTGTCCTATATGCTGGGAGTCATTCAATATTGTAGAGAATGTACCATATGTCTTGTGGTGTGGTCACACTCTCTGCAAAAACTGTGTTCTTGGCCTTCAATGGGCAACTGTGAAATTTCCTACGCTACCTGTTCAGCTGCCTCTGTTCATTTCTTGCCCATGGTCCCAACTCTTATCCTTTAGGTTGGTTTGGAAAGGATGCCTTAAGTTTCCACGAAAGA

Fln Alignment:

Contig3790___MWSFASNAISGTMGFKGRETSVCSDDEASSRKSAEERLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWATVKFPTLPVQLPLFISCPWSQLLSFRLVWKGCLKFPRK
D5AAG2_________________MWSFASNAISGTMGFKGRQASVCSDDEASSRKSAEEKLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWATVKFPTLPVQLPLFISCPWCQLLSFRLVWKGSLKFPRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain