SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3774

Length: 1218 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3774 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9509	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-1,3-galactosyltransferase 12 [Arabidopsis thaliana] sp\|Q66GS2.1\|B3GTC_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 12 gb\|AAU05453.1\| At2g26100 [Arabidopsis thaliana] gb\|AAU45204.1\| At2g26100 [Arabidopsis thaliana] gb\|AEC07794.	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	beta- -galactosyltransferase sqv-	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	76%
Blast2go	galactosyltransferase activity	GO:0008378	Molecular Function	76%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 31	IPR002659	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 84 aas, putative chimeric sequence, your sequence is shorter than subject: 213 - 340

Fln protein: YACFCVGTFGILFSVFCLVKGKPIYTFRCGKVEDTLRSIHLGGDSERYVGWAGGLNHQTAGLESQDRPKVLGVVGIQTGFGSSQRRKALRETWLPSDPDSLLNLEQATGLAFRFVIGRTKDAQKMAELEKEMEKYTDFMLIDVEEEYHKLPYKTLSFFKAAYALFDADFYVKADDDIYLRPDRLATLLAKERPSPRTYIGCMKKVQLSPILS*

Protein Length: 214

Fln nts: CTATGCCTGCTTTTGTGTGGGCACTTTTGGCATCCTTTTCTCGGTCTTCTGCCTTGTGAAAGGAAAGCCTATTTACACCTTCAGATGCGGGAAAGTGGAAGACACGTTGAGAAGCATTCATCTCGGAGGTGACAGCGAGAGGTATGTCGGATGGGCTGGAGGATTAAATCATCAGACTGCTGGATTAGAGAGTCAGGATCGACCAAAGGTATTGGGCGTCGTTGGTATTCAGACGGGATTCGGTTCTTCTCAGCGCCGGAAAGCTTTGAGGGAAACCTGGCTACCTTCGGACCCAGATAGCCTCTTAAACTTGGAGCAAGCAACAGGATTGGCTTTCAGATTTGTGATTGGTCGAACAAAAGATGCACAGAAAATGGCAGAACTTGAGAAGGAGATGGAGAAATACACAGATTTTATGCTTATTGATGTTGAGGAAGAATACCATAAGCTGCCTTATAAAACGTTGTCTTTCTTCAAAGCTGCGTATGCTCTCTTTGATGCTGATTTCTATGTTAAAGCCGATGATGACATCTACTTGCGTCCAGATCGCCTTGCGACACTTCTGGCGAAGGAGCGTCCTTCTCCCCGGACATACATAGGATGCATGAAAAAGGTCCAGTTATCACCGATCCTAAGTTGA___AATGGTATGAACCTGCGGCATACTTGCTAGGGAGTGAGTATTTTTATCATGCGTATGGGCCTATATATGCACTTTCTGCTGAAGTGGTAGCAGGATTGGCAGTGGCAAGAAACGACAGTTTTAGAATGTTAAGCAATGAGGATGTCACCATTGGGGCATGGATGCTTGCTATGAATGTTGAGCATGAAGATAATCGAGAATTATGTCATCCCCATTGCAAACCAGATTCTATTGCTGTGTGGGATATCCCCAAGTGTTCAGGTCTTTGTAACCCTGCAGAAAAACTGCCGGAATTGCACAAGAACAATATGTGTTCAACGAGTCCTACACTACCAGCTGACGAAAAGTGAATGAAGGCCTTCCAATTCTTTGTAGATGCTAATGTATGTGACATTACAAATCATTTTTAAAGCCAAATGGAAATTCCATTCCATTCTTGTGGCATATATTATGTATCATGTGCTCGTTAAGCTGATAGAAATTTTAAAACCTCAGCATCTCTCTTTAGCACAATATTTCAGGGTTGTACCATATTCAATGCCAACATAATTATCTCTGATATTGGTCAACTTTGAAGG

Fln Alignment:

Contig3774___KVLGVVGIQTGFGSSQRRKALRETWLPSDPDSLLNLEQATGLAFRFVIGRTKDAQKMAE--LEKEMEKYTDFMLIDVE-EEYHKLPYKTLSFFKAAYALFDADFYVKADDDIYLRPDRLATLLAKERPSPRTYIGCMK
A9NVS4_________________RLMAVVGIMTEFGHRSHRDSIRKSWMPTGT-KLRKLEEDKGIIIRFVVGRSANRGDIYDKAIDDENRQTKDFFILENHVESSEELPKKPKLYFSNAADTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
496	66	33			0.997452
498	33			66	0.997452
725	66		33		0.997452
734	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain