SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3747

Length: 554 nt

UniGene Fasta

>biog2_v2.0_unigene3747
GGTTCAATGCATGCCAAGGCTTTTGACTGGATTAATCCATCTGAAGCAGCAGACTCATCTAAAGCAAAATTAGCAAAACTGGTGAAAGATTGTGAAATGTCTGCACCCTGCGACACTACTATTCTCTATCCTACAAGTGGTGGTAATATACATACATTCAAGGCCTTGACACCTTGTGCACTTCTTGATGTTCTGGCACCGCCGTATTCTACAGATGATGGCAGGCATTGCTCATATTATCGCAAATCTCCTAAACGAATTCCTTCTGGTCTACAACTTAATGGCATAGATGTAGCTAGTCATCAGTTGGCTTGGTTAGAAGACTATCAACCCCCCGATGATTTTGTGGTGCAGAGAGGACTGTACAGGGGTCCAAAGGTGGTGCTTTGATTTCCTTGGCTGTACCATATTTCTACTACTGATTTTTTAGACACTAAAATAGGGAGGGATTCTTCTGTTGTGTGTTATATGTGGAATCTCTTAGAAATCACAACATAGATCTACAGCGTAACATGCATTTTCATGTGAAAAATCTTGCATGTGTTCGGCTGGGA

Ace file of the UniGene biog2_v2.0_unigene3747

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8375	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] ref\|NP_001078310.1\| uncharacterized protein [Arabidopsis thaliana] ref\|NP_001190128.1\| uncharacterized protein [Arabidopsis thaliana] emb\|CAB88284.1\| putative protein [Arabidopsis thaliana] gb\|AAK93617.1\| unk	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	2-aminoethanethiol dioxygenase-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteamine dioxygenase.	EC:1.13.11.19	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Metabolic pathways	01100		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	cysteamine dioxygenase activity	GO:0047800	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cysteamine dioxygenase	IPR012864	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRF3

Fln msg: your sequence is shorter than subject: 130 - 239

Fln protein: GSMHAKAFDWINPSEAADSSKAKLAKLVKDCEMSAPCDTTILYPTSGGNIHTFKALTPCALLDVLAPPYSTDDGRHCSYYRKSPKRIPSGLQLNGIDVASHQLAWLEDYQPPDDFVVQRGLYRGPKVVL*

Protein Length: 131

Fln nts: GGTTCAATGCATGCCAAGGCTTTTGACTGGATTAATCCATCTGAAGCAGCAGACTCATCTAAAGCAAAATTAGCAAAACTGGTGAAAGATTGTGAAATGTCTGCACCCTGCGACACTACTATTCTCTATCCTACAAGTGGTGGTAATATACATACATTCAAGGCCTTGACACCTTGTGCACTTCTTGATGTTCTGGCACCGCCGTATTCTACAGATGATGGCAGGCATTGCTCATATTATCGCAAATCTCCTAAACGAATTCCTTCTGGTCTACAACTTAATGGCATAGATGTAGCTAGTCATCAGTTGGCTTGGTTAGAAGACTATCAACCCCCCGATGATTTTGTGGTGCAGAGAGGACTGTACAGGGGTCCAAAGGTGGTGCTTTGA___TTTCCTTGGCTGTACCATATTTCTACTACTGATTTTTTAGACACTAAAATAGGGAGGGATTCTTCTGTTGTGTGTTATATGTGGAATCTCTTAGAAATCACAACATAGATCTACAGCGTAACATGCATTTTCATGTGAAAAATCTTGCATGTGTTCGGCTGGGA

Fln Alignment:

Contig3747___GSMHAKAFDWINPSEXXXXXXXXXXXXXXXCEMSAPCDTTILYPTSGGNIHTFKALTPCALLDVLAPPYSTDDGRHCSYYRKSPKRIPSGLQLNGIDVASHQLAWLEDYQPPDDFVVQRGLYRGPKVV
B8LRF3_________________GSMHAKAFDWINPSEAADTSKAKLAKLVKDCEMSAPCDTTILYPTSGGNLHSFRALTPCALLDVLAPPYSTDNGRHCSYYRKLPKRIPSGLQLNGIDVASYQLAWLEDYQPPDDFVVQRGLYRGPKVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain