SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3741

Length: 894 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3741 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15298	76/80
SustainPine v2.0	sp_v2.0_unigene33345	4/80

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative Pollen specific protein C13 precursor [Oryza sativa Japonica Group] gb\|AAN31783.1\| Putataive pollen specific protein C13 precursor [Oryza sativa Japonica Group] gb\|AAP53386.1\| Pollen proteins Ole e I family protein, expressed [Oryza sativa Japoni	-	-	4.0e-18	40%
FL-Next	tr=Extensin-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	extensin-like protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
125	16		83		0.994512
800	76	19	4		1.0
801		19	76	4	1.0
802	75	25			1.0
804		5	75	20	1.0
860		60	40		1.0
861		60		40	1.0
862		60	40		1.0
863	10	50	40		1.0
864	90			10	0.90298
865	44			55	1.0
866		75	25		0.996473
867	25	50		25	0.995533
868		66	33		0.997452
870	33	33	33		0.997753
871	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain