SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3715

Length: 1889 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3715 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16097	36/36

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase n=1 Tax=Populus trichocarpa RepID=B9HKX1_POPTR	-	-	67%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	78%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	78%
Blast2go	gametophyte development	GO:0048229	Biological Process	78%
Blast2go	starch catabolic process	GO:0005983	Biological Process	78%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	78%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	78%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	78%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	78%
Blast2go	protein self-association	GO:0043621	Molecular Function	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: your sequence is longer than subject: 563 - 492

Fln protein: MHSLQVSSPPVSPCSSSPSAEEWWRRTGHSPRGQNVGLRPDLSVACQAFEVQTQAVTATDAEAGVGAQIEQSFEEKLHDLPLDAVKKHGAGGVPVFVMLPLDSINHNNTVNRRKAMNASLQALKSAGVEGVMVDVWWGLVEREAPGQYNWSGYRELLEMVKKHGLKVQAVMSFHQCGGNVGDSANIPLPKWVVEEINHDNDLAYTDQWGRRNYEYISLGCDNLPVLKGRTPVQCYGDYMRSFKENFKDLLGQTIVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMISNLRSTSEAAGKQEWGNGGPSDAGHYNNWPEDSPFFRRDGGWNSSYGEFFLEWYSRMLLDHGERILGAAEAIFHGTGTKLSGKVAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIASMFARHGVIFNFTCIEMKDYEQPGDAQCSPEKLIKQVILATRKAGVRLAGENALPRFDQDAHHQIIRNANLRLPEDGRDTRVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKLAQGEASLNSWEQEHRDTDSFVHASGPFFQEAAALMHN*

Protein Length: 564

Fln nts: GAT_-_ATGCACTCATTACAAGTTTCTTCTCCCCCTGTAAGTCCATGTAGTTCTTCTCCGTCTGCCGAGGAATGGTGGAGGAGGACTGGTCATAGCCCTAGAGGACAAAATGTCGGGCTTCGACCAGATTTGTCGGTGGCGTGCCAGGCATTTGAGGTTCAAACTCAGGCTGTCACTGCCACAGATGCGGAAGCCGGAGTTGGTGCCCAAATTGAGCAGAGTTTTGAAGAAAAGTTGCATGATTTGCCTCTGGATGCTGTGAAAAAGCATGGAGCGGGCGGGGTGCCTGTGTTTGTTATGCTCCCTCTGGATAGCATAAACCATAACAATACGGTCAATAGACGGAAGGCTATGAATGCCAGTCTTCAAGCCTTGAAGAGTGCTGGTGTTGAGGGAGTTATGGTGGATGTTTGGTGGGGTCTTGTTGAACGAGAGGCTCCAGGGCAGTATAATTGGTCTGGGTACAGAGAGCTGCTGGAAATGGTCAAGAAACATGGATTGAAAGTCCAGGCTGTAATGTCATTCCACCAGTGTGGAGGAAATGTTGGGGATTCTGCCAATATTCCATTGCCAAAATGGGTTGTCGAAGAAATAAACCATGATAACGATCTAGCCTACACGGACCAGTGGGGCAGGAGAAACTATGAGTATATTTCTTTGGGATGTGATAATCTTCCAGTTTTGAAGGGAAGGACACCCGTTCAATGCTATGGTGATTACATGCGGAGTTTCAAGGAGAATTTTAAGGATCTTTTGGGGCAAACCATTGTGGAAATTCAAGTGGGAATGGGTCCTGCAGGAGAGCTGCGGTATCCATCTTATCCTGAGAGTAACGGTACATGGAAATTCCCAGGGATTGGAGCATTTCAGTGCTATGATAAGTATATGATCTCTAACCTTAGATCCACGTCCGAAGCTGCTGGAAAGCAGGAGTGGGGTAATGGGGGTCCAAGTGATGCAGGTCATTACAATAACTGGCCTGAGGACAGCCCGTTTTTCCGCAGAGATGGTGGCTGGAACAGTTCTTATGGTGAGTTTTTTCTTGAGTGGTATTCTCGTATGCTTCTTGATCATGGAGAGAGAATCCTAGGAGCAGCTGAAGCCATTTTCCATGGCACTGGCACCAAGCTTTCTGGCAAAGTGGCTGGTATTCACTGGCATTATGGAACCAGATCTCATGCCCCTGAGCTTACTGCTGGATATTATAATACCCGGTTCAGAGATGGGTATCTGCCAATAGCTTCCATGTTTGCAAGACATGGGGTGATTTTCAATTTTACTTGCATTGAAATGAAGGATTATGAACAGCCGGGAGATGCACAATGCTCCCCAGAGAAGCTGATCAAACAAGTCATCCTGGCAACTCGAAAAGCAGGGGTACGTCTTGCAGGGGAGAATGCGCTTCCAAGATTTGATCAAGATGCACACCATCAGATCATTAGGAACGCCAATCTCCGACTGCCAGAGGATGGTCGAGACACCAGAGTTGAACCCATGTGTGCATTTACTTATTTGAGAATGAACCAGCATTTATTCCAGCCTGAAAATTGGAGGTTGTTTGTCTCATTTGTTAGAAAATTGGCACAAGGAGAGGCCTCCTTAAATTCCTGGGAGCAAGAACACAGAGACACAGACTCATTTGTCCATGCCAGTGGGCCATTTTTCCAAGAGGCTGCTGCACTGATGCATAACTAG___GTCTCAGGCATACTTCTTAGCATTTCAGTTATAGTTCTTATGTTGTACTTTTATAAAGTTCGTGATTTGTCTTTTAATTGTTATAATGTCGGGATGTATAGACCTACAGCTCTTATCCATTGGGCCGCTGCCCTGCTGCATTCTAATTCTATGGCAGCAGTTTGCAAGCCAGCAGGAAGTCAATGGGCATATTAGTG

Fln Alignment:

Contig3715___LDAVKKHGAGGVPVFVMLPLDSINHNNTVNRRKAMNASLQALKSAGVEGVMVDVWWGLVEREAPGQYNWSGYRELLEMVKKHGLKVQAVMSFHQCGGNVGDSANIPLPKWVVEEINHDNDLAYTDQWGRRNYEYISLGCDNLPVLKGRTPVQCYGDYMRSFKENFKDLLGQTIVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMISNLRSTSEAAGKQEWGNGGPSDAGHYNNWPEDSPFFRRDGGWNSSYGEFFLEWYSRMLLDHGERILGAAEAIFHGTGTKLSGKVAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIASMFARHGVIFNFTCIEMKDYEQPGDAQCSPEKLIKQVILATRKAGVRLAGENALPRFDQDAHHQIIRNANLRLPEDGRDTRVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKLAQGEASLNSWEQEHR
A9NVE4_________________LPSISTRDHGGVPVFVKLPLDSVTSKHTVNRRKAMDASLMALKSAGVEGVMVNVWWGLVEREAPGEYNWSAYRELLEMVRKRGLKVQAVMSFHKCGGNVGDSVSIPLPKWVVEEIDRDNDLAYTDQWERRNYEYISLGCDNLPVLKGRTPVQCYSDFMRSFKENFTDLMGETVVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGGWNSPYGEFFLQWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAYTQVLNNSCLRLEQDNPDDKIEPMCAFTYLRMSQHLFQSKNWSTFVSFVRRMSQQNAVSISRDEKQR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1296	16			16	0.988813
1451		71	14		0.984337
1721	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain