SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3706

Length: 826 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3706 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9148	8/9
SustainPine v2.0	sp_v2.0_unigene61825	1/9

Source	Descriptions	Term	Type	Identity
AutoFact	transcription regulator [Arabidopsis thaliana] gb\|AAL86308.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67542.1\| unknown protein [Arabidopsis thaliana] gb\|AED91870.1\| transcription regulator [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of transcription from RNA polymerase III promoter	GO:0016480	Biological Process	73%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Maf1 regulator	IPR015257	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
705			33	66	1.0
739	80	20			0.995493
740	80	20			0.995493
743			80	20	0.995493
811		33	66		0.997452
814		33		66	0.997452
816			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain