SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3699

Length: 228 nt

UniGene Fasta

>biog2_v2.0_unigene3699
CCGTGGATCCACCTGGGCTGGATGCGGTGGACTTGACCGCTCTTCTGCTGATCACATTGGGATGCTGGCAACTGTTATGAATGCTATATTTTACAAGCAACCATGGAAAGCATTGGTATTGCAACTCGTGTTCAAACTGCATTTCGGATGTCAGAAGTTGCTGAACCTTATATACGCAGAAGAGCAATCAGGCATTTAGAGAAAGGGAGAGTCGTGATCTTTGCTGCT

Ace file of the UniGene biog2_v2.0_unigene3699

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3997	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	uridylate kinase [Arabidopsis thaliana] dbj\|BAB01794.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK92763.1\| putative uridylate kinase [Arabidopsis thaliana] gb\|AAM14100.1\| putative uridylate kinase [Arabidopsis thaliana] gb\|AEE76131.1\| uridylate	-	-	84%
FL-Next	tr=Putative uridylate kinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	uridylate kinase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	UMP kinase.	EC:2.7.4.22	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	91%
Blast2go	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	91%
Blast2go	phosphorylation	GO:0016310	Biological Process	91%
Blast2go	mRNA processing	GO:0006397	Biological Process	91%
Blast2go	RNA binding	GO:0003723	Molecular Function	91%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	91%
Blast2go	UMP kinase activity	GO:0033862	Molecular Function	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	0.0	-
Sma3	Uridylate kinase, bacteria	IPR015963	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9LSA9

Fln msg: Overlapping hits, possible frame ERROR between 115 and 91, Distance to subject end: 115 aas, your sequence is shorter than subject: 76 - 339

Fln protein: RGSTWAGCGGLDRSSADHIGMLATVMNAIxxxxxxxxxxIATRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAA

Protein Length: 77

Fln nts: CCGTGGATCCACCTGGGCTGGATGCGGTGGACTTGACCGCTCTTCTGCTGATCACATTGGGATGCTGGCAACTGTTATGAATGCTATAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGCAACTCGTGTTCAAACTGCATTTCGGATGTCAGAAGTTGCTGAACCTTATATACGCAGAAGAGCAATCAGGCATTTAGAGAAAGGGAGAGTCGTGATCTTTGCTGCT

Fln Alignment:

Contig3699___RGSTWAGCGGLDRSSADHIGMLATVMNAIFxxxxxxxxGIATRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAA
Q9LSA9_________________RGSTWAGCSGLDRSSADYIGMLATVMNAIFxxxxxxxxGIPTRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
21		33	66		0.997452
137	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain