SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3697

Length: 1183 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3697

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7820	4/9
SustainPine v2.0	sp_v2.0_unigene61498	5/9

Source	Descriptions	Term	Type	Identity
AutoFact	Ccaat-binding transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHZ1_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	nuclear transcription factor y subunit c-9	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTJ8

Fln msg:

Fln protein: MDEQSAMQHMPMHYRATPYPNAQLQPNIAHGAFQQPSIHGHPHALSSHHNQLPYQQQIHQHQRQLHHHQQQQIEVFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIVPRDELKEDQVINLGNPRSVLSVGSSSTNAAAAAVGAANSFPYYYLPNQHSVPHGVFVGKPMDPTIYMQQPQSPVAYMPNIWQWGHVQADQSKSPNPAS*

Protein Length: 271

Fln nts: ATGGGGAGCTTCGGGCAGCTTGAAGGCCGCCTGTCAGCACTGGATGCTGCCCGGGATTAACCCCCATCGCCTCTTCCTGCTCTCCCCTTCCCGTTCGTCAACTTCTTCGCCCTTCTTTATTAATGATGCAACCAGATGTTAATGAAAAATTTGCCAACGCTTTTTGGGTTTGGAAACAAGATTTTGCCATCTGGTGAAGAGCGCCTGGTTTTGATCCAGAATTCTCGGATTTTGCTTCATTGGGCTTCGACTTCGGCCAAAA_-_ATGGACGAGCAATCCGCAATGCAACACATGCCTATGCATTACAGGGCAACGCCTTATCCGAATGCTCAGCTGCAGCCTAACATTGCTCATGGAGCGTTCCAGCAGCCCTCCATTCATGGCCATCCTCATGCTCTATCTTCCCACCACAATCAATTGCCTTATCAGCAGCAAATTCATCAGCACCAACGCCAGCTGCATCATCACCAGCAGCAGCAGATCGAGGTTTTCTGGGCTAACCAGATGCAGGAAATCGAGCAAGCTGTCGATTTCAGAAATCACAGTCTCCCTCTCGCGAGAATCAAGAAGATAATGAAGTCAGACGACGAGAATGTCAGGATGATATCTGCGGAGGCTCCCGTGGTGTTTGCCAAGGCCTGCGAGATGTTCATCAATGAGCTTACTCTAAGGGCCTGGATTCACACTGAAGAAAACAAGAGACGAACCCTGCAGAAGAACGATATAGCTGCGGCCATAGCCAGGACTGATATATTCGATTTCCTGATCGATATTGTTCCCAGGGATGAGTTGAAGGAGGATCAGGTTATTAATCTTGGAAACCCTAGATCTGTACTCTCAGTTGGAAGCAGCAGTACCAACGCTGCTGCTGCTGCTGTTGGTGCTGCTAATTCTTTTCCTTACTATTATTTACCCAACCAGCATTCTGTGCCTCATGGTGTGTTTGTTGGGAAACCCATGGATCCCACCATTTATATGCAGCAGCCACAGTCTCCCGTGGCTTACATGCCTAATATATGGCAGTGGGGACATGTACAGGCAGACCAATCCAAGTCGCCTAACCCTGCAAGTTGA___ACTCTAACATGGGCTAGCTTCTAAATTCGTCATAGTTTGAGGGAATGCCTGATTGTGTGTGTGTGTTTGTTTCTGGCTTTTTATTAGAGATGTCATTTCGATTGTAAGCTT

Fln Alignment:

Contig3697___MDEQSAMQHMPMHYRATPYPNAQLQPNIA-HGAFQQPSIHGHPHALSSHHNQLPYXXXXXXXXXXXXXXXXXX--IEVFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIVPRDELKEDQVINLGNPRSVLXXXXXXXXXXXXXXXXXXXFPYYYLPNQHSVPHGVFVGKPMDPTIYMQQPQSPVAYMPNIWQWGHVQADQSKSPNPAS
A9NTJ8_________________MEEHSAMQHMPMHYRAMPYPNTQIQPNIAAHGAFQQPPIHAHHHALSSHHNQLPYQHQQQIHQHQRQLHHQQQQQIEVFWANQMQEIEQAVDFRNHSLPLARIKKIMKSDDENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIVPRDELKEDQVINLGNPRSAL----SVGSSSTNAAAGANSFPYYYLPNQHSVPHGVFVGKPMDPTIYMQQPQSPVAYMPNIWQWGHMQADQSKSPNPGS

SNPs (tot: 5)

Position	C %	G %	T %	Probability
191	66	33		0.997452
192		33	66	0.997452
815	80	20		0.995493
816		20	80	0.995493
817		20	80	0.995493

SSRs (tot: 3)

Start position	End position	Sequence	Length
467	478	CAG CAG CAG CAG	12
860	875	GCT GCT GCT GCT GCT G	16
1126	1138	TG TG TG TG TG TG T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain