SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3690

Length: 1249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene3690 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15391	30/30

Source	Descriptions	Term	Type	Identity
AutoFact	ribose-5-phosphate isomerase A [Thermosynechococcus elongatus BP-1] sp\|Q8DJF2.1\|RPIA_THEEB RecName: Full=Ribose-5-phosphate isomerase A; AltName: Full=Phosphoriboisomerase A; Short=PRI dbj\|BAC08825.1\| ribose 5-phosphate isomerase [Thermosynechococcus elon	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	ribose-5-phosphate isomerase a	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	DeoR C-terminal sensor domain	IPR014036	-	0.0	-
Sma3	Ribose 5-phosphate isomerase, type A	IPR004788	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR5

Fln msg:

Fln protein: MAAAATMQVSFVSDRLISFKKTTAGELFGLKMVKFSSDMGGLGRASHRKIIASASSRAMEPVRIDALKRAVAKRAVELVKPGMVIGLGTGSTASLAIEELGKLFQQGKLKDVLGVGTSYQSRVLARQFGVKTVDLNDVIHIDIAFDGADEVDPSMNILKGGGAAHTMGKVIATMAKKSVILVDQSKVVLQLGQIFPVPVEVLPPAISPVLRQLVALGGVPEIRSALRKDGPVITDFGNMVVDVRFPEGIKDPAALEKKIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELGEFVKSLKSVKEEYSTA*

Protein Length: 312

Fln nts: TATGGGGACATTTGTTTACGAGGGAGAAGGATACTGGATCCTGCTCACTTGTATTTCCACTAGAGTTGACTAATTAATGACATCGACATTCTCATCTTCTTCTCCTCTTCTTCGGCTGTTCTCAGTACTGTGACAACTTCGTTATTTCTTTCTTTCGGAATAATCAGTACTTCTTCATCTCGGCTCGCAGTTGTTCTATACAGAGCC_-_ATGGCAGCGGCAGCTACAATGCAAGTTTCGTTTGTTTCAGATCGTTTAATTTCGTTCAAGAAGACAACAGCAGGGGAGTTATTTGGCCTGAAAATGGTAAAATTTTCAAGTGACATGGGAGGGCTGGGGAGAGCCAGCCACAGGAAGATTATCGCGTCAGCATCTTCCCGCGCAATGGAGCCAGTACGAATAGATGCCTTGAAGCGTGCTGTTGCTAAGCGAGCTGTAGAACTTGTCAAACCAGGAATGGTGATTGGTCTTGGGACTGGTAGCACAGCTTCATTAGCAATTGAAGAATTAGGGAAGCTTTTTCAACAAGGAAAGTTGAAGGATGTTCTTGGAGTGGGAACAAGCTACCAATCACGGGTTCTTGCTCGGCAATTCGGTGTTAAAACAGTTGACTTAAATGATGTTATTCACATTGATATTGCATTTGATGGTGCAGATGAAGTTGATCCTTCCATGAACATTCTAAAGGGTGGGGGAGCTGCTCATACTATGGGGAAGGTTATTGCCACCATGGCCAAAAAGTCTGTGATATTGGTGGATCAATCGAAAGTTGTGTTACAGCTTGGACAAATTTTTCCTGTGCCGGTTGAAGTTCTTCCTCCAGCAATTTCTCCTGTTCTACGGCAACTTGTCGCTCTTGGAGGAGTGCCTGAAATTCGTAGTGCCCTGAGGAAAGATGGTCCTGTGATTACGGACTTTGGAAATATGGTTGTTGATGTCAGGTTTCCGGAAGGCATTAAAGATCCTGCTGCTCTAGAAAAGAAAATCAAGTTGATACCCGGAGTTGTTGAAAATGGTCTTGTTACAGGGGTTGCAAGCTCTGTTTTGGTTGCTACACAAGATGGGGATGACATCACCATTGTCGAGTTAGGTGAATTTGTCAAGAGTCTGAAAAGTGTCAAGGAAGAATACTCCACAGCATGA___AATCCTGGACATTATATGCTTGTTACAGTTTTTAAGTAGAGGAGACGTACCTCTCACATGTACAGCTTTTATTGTCATGCTTTCAGTTGATGGATGATTGTTGTAGTCC

Fln Alignment:

Contig3690___TMQVSFVSDRLISFKKTTAGELFGLKMVKFSSDMGGLGRASHRKIIASASSRAMEPVRIDALKRAVAKRAVELVKPGMVIGLGTGSTASLAIEELGKLFQQGKLKDVLGVGTSYQSRVLARQFGVKTVDLNDVIHIDIAFDGADEVDPSMNILKGGGAAHTMGKVIATMAKKSVILVDQSKVVLQLGQIFPVPVEVLPPAISPVLRQLVALGGVPEIRSALRKDGPVITDFGNMVVDVRFPEGIKDPAALEKKIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELGEFVKSLKSVKEEYSTA
B8LQR5_________________TMQASFVSDRLISFKKSTAGELFGLKTVKFSSEMGGLRRPSQRKNITLASSQATEPLLQNTLKRAVAKRAVELVKPGMVIGLGTGSTASLAIEELGKLIQQGKLKDVVGVGTSYQSRVLARQFGVKTVDLNDVIHIDIAFDGADEVDPSMNILKGGGAAHTMGKVIDTMAKKSVILVDQSKVVFELGQIFPVPVEVLPPAISPVLRQLVALGGVPEIRSALRKDGPVITDFGNMVVDVSFPEGIKDPAALEKRIKLIPGVVENGLVTGVASSVLVATQDGDDITIVELDEFVKSLKSVKEAYSKA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
957	33		66		0.997452
1040		75		25	0.996473
1110		60		40	1.0
1150	60	40			1.0
1151	60	40			1.0
1152		40	60		1.0
1153	60	40			1.0
1155			60	40	1.0
1170		33	66		0.997452
1171		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain