SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3621

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3621
ATGGGAGTACACAGTCGAGCAATAATCCTTTATTTGTTGGTATCCTGCCCCCCAGAGAAAGATTTCCGGAGAAGTATGTTGCAGTTTTGTCCTCTGTTCCTACTGTTTTGCACCCTGGAGCATGTGTACTAGTAGTGGGAAAGCAGAGTCCCCCTGTTTTTGCACTTTACTGGGATAAAAAGCTGCAGTTTTCTCTTCAGGGACGGACTGCTCTTTGGGATGCAATTTTACTTTTTTGCCACAGAATCAAGGTGGCTCATGGTCGGATGGTTCGAGGAATTAATCTTGGATCCTCTGCTCTTAATATTCTCTCAGTTTTTGAACCACAGTCTGAAGGCAATGTATCATAGTGCATATCCTTCTATTTTGTTTCAGGAAGTCACTGGTGCATGTGAGCACTTAGTGCTTATATTCTGCATCTGTTAGGCAAGGCACAGACATCAAACTT

Ace file of the UniGene biog2_v2.0_unigene3621 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10340	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence.	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	81%
Blast2go	transmembrane protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome B561-related	IPR019176	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8QS77

Fln msg: your sequence is shorter than subject: 116 - 498

Fln protein: GSTQSSNNPLFVGILPPRERFPEKYVAVLSSVPTVLHPGACVLVVGKQSPPVFALYWDKKLQFSLQGRTALWDAILLFCHRIKVAHGRMVRGINLGSSALNILSVFEPQSEGNVS*

Protein Length: 117

Fln nts: ATGGGAGTACACAGTCGAGCAATAATCCTTTATTTGTTGGTATCCTGCCCCCCAGAGAAAGATTTCCGGAGAAGTATGTTGCAGTTTTGTCCTCTGTTCCTACTGTTTTGCACCCTGGAGCATGTGTACTAGTAGTGGGAAAGCAGAGTCCCCCTGTTTTTGCACTTTACTGGGATAAAAAGCTGCAGTTTTCTCTTCAGGGACGGACTGCTCTTTGGGATGCAATTTTACTTTTTTGCCACAGAATCAAGGTGGCTCATGGTCGGATGGTTCGAGGAATTAATCTTGGATCCTCTGCTCTTAATATTCTCTCAGTTTTTGAACCACAGTCTGAAGGCAATGTATCATAG___TGCATATCCTTCTATTTTGTTTCAGGAAGTCACTGGTGCATGTGAGCACTTAGTGCTTATATTCTGCATCTGTTAGGCAAGGCACAGACATCAAACTT

Fln Alignment:

Contig3621___STQSSNNPLFVGILPPRERFPEKYVAVLSSVPTVLHPGACVLVVGKQSPPVFALYWDKKLQFSLQGRTALWDAILLFCHRIKVAHGRMVRGINLGSSALNILSVFE
D8QS77_________________STQSGNNPLFVASLPQKERFPDKYVAVLSSAPPVLHAGACILAVGKQSPPVFALYWDKKLQFSLQGRTALWDAILLLCHRIKVAHGGIVRGINLGGQAFNLLSLLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain