SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3612

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3612
CGTGTAGTCATATCTGACAGCGACAAGGAATATGAATGGTGGTCGTCCATCAAAGCATCTACCCTTCATAACCTCACCATTGATGTTGTTCCAGAGATCTTTAGCTTGGCCTGGCTTGATGATTGAACTTGGTTTTCCAAGCTTGGGAATAAGTTCATCATGCTCTTCTAAAACTACACTGTTCATGTATTGAGGGGTAAGCTGTTGCTTCAATGTATGTCATCCATGCGAAGATGTAAAGCTTATTATACATGGAATAGCCTGTACAGAATGATGCAAACTTTCTATACATGAAATAGTCTGTACAGAATCAGAAGTATCTGAAGTGTCAAGCAACCTCGAATGTGCCGGGAACGGT

Ace file of the UniGene biog2_v2.0_unigene3612 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58115	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I8_PINTA	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	leucine rich repeat-like protein	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT41

Fln msg: your sequence is shorter than subject: 42 - 852

Fln protein: RVVISDSDKEYEWWSSIKASTLHNLTIDVVPEIFSLAWLDD*

Protein Length: 43

Fln nts: CGTGTAGTCATATCTGACAGCGACAAGGAATATGAATGGTGGTCGTCCATCAAAGCATCTACCCTTCATAACCTCACCATTGATGTTGTTCCAGAGATCTTTAGCTTGGCCTGGCTTGATGATTGA___ACTTGGTTTTCCAAGCTTGGGAATAAGTTCATCATGCTCTTCTAAAACTACACTGTTCATGTATTGAGGGGTAAGCTGTTGCTTCAATGTATGTCATCCATGCGAAGATGTAAAGCTTATTATACATGGAATAGCCTGTACAGAATGATGCAAACTTTCTATACATGAAATAGTCTGTACAGAATCAGAAGTATCTGAAGTGTCAAGCAACCTCGAATGTGCCGGGAACGGT

Fln Alignment:

Contig3612___RVVISDSDKE-YEWWSSIKASTLHNLTIDVVPEIFSLAWLDD
C0PT41_________________RVIISESDKESLGAWLSIKASTIHNLIINVVPESFSLDWLDD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
206	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain